PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31149.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 355aa    MW: 39700.9 Da    PI: 8.3231
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31149.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.3e-52141391128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkat
  mrna31149.1-v1.0-hybrid  14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98 
                              79****************************.89***************7777799******************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  mrna31149.1-v1.0-hybrid  99 GTDKVITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
                              ******99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6610162IPR003441NAC domain
PROSITE profilePS5100560.17914162IPR003441NAC domain
PfamPF023656.1E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGVPETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITTEGRK VGIKKALVFY  120
VGKAPKGTKT NWIMHEYRLI EPSRKNGSSK LDEWVLCRIY KKSSSSSAIQ KPMMVSNVPS  180
KEQSCNGSSS ECSSQLDDVL EWLPEIEDRF FTLPRINSLK TLPQQQEDTK LSLQNLGNLG  240
SGNFDWASLA GLNTVPEVPP NTQAQAQAQI NYNNDAYVPS IPPLCHVESP PERMRRQAEE  300
EVQSGLRTQR GENSGLFQQN SSMFTQSMCT PIDTYGLGSR FGMTGPGFSF GSGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-11111664169NO APICAL MERISTEM PROTEIN
1ut4_B1e-11111664169NO APICAL MERISTEM PROTEIN
1ut7_A1e-11111664169NO APICAL MERISTEM PROTEIN
1ut7_B1e-11111664169NO APICAL MERISTEM PROTEIN
3swm_A1e-11111667172NAC domain-containing protein 19
3swm_B1e-11111667172NAC domain-containing protein 19
3swm_C1e-11111667172NAC domain-containing protein 19
3swm_D1e-11111667172NAC domain-containing protein 19
3swp_A1e-11111667172NAC domain-containing protein 19
3swp_B1e-11111667172NAC domain-containing protein 19
3swp_C1e-11111667172NAC domain-containing protein 19
3swp_D1e-11111667172NAC domain-containing protein 19
4dul_A1e-11111664169NAC domain-containing protein 19
4dul_B1e-11111664169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31149.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291667.10.0PREDICTED: NAC domain-containing protein 72-like
SwissprotQ9SQL01e-139JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A2P6QB410.0A0A2P6QB41_ROSCH; Putative transcription factor NAM family
STRINGXP_004291667.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-126NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]