PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna25113.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Nin-like

Protein Properties

Length: 952aa MW: 105159 Da PI: 5.1742

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna25113.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.3e-29	576	626	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ mrna25113.1-v1.0-hybrid 576 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 626 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	565	646	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	579	626	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-22	848	941	No hit	No description
SMART	SM00666	1.3E-27	856	938	IPR000270	PB1 domain
PROSITE profile	PS51745	23.337	856	938	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-24	856	937	No hit	No description
CDD	cd06407	7.88E-35	857	937	No hit	No description
Pfam	PF00564	4.8E-20	857	937	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MSDPEDDRAP SIFPKSKSLD ASSLMDFDID VPWPLDQIHF LSNPTSPLFF SPADDPCSPL 60 WAFSDVNNND KLARALPDPA QSVSDTNPVA QKRKENEDNR IVPSPFSGLE PNADGYFLIK 120 ERITRALRYL KESSDQHVLA QVWAPVWDGN RYVLTTSGQP FVLDPHDGLH QYRMVSLMYM 180 FSVDGENDGV LGLPGRVFQQ KLPEWTPNVQ YYSIKEYPRL DHAQHYNVQG TLALPVFEPS 240 GRSCIGVIEL IMTSQKINYA PEVDKICKAL EAVSLKSSEM LDHTSTQIQI RNEGRQTALT 300 EILEILTMVC ETHKLPLAQT WVPCMHRNVL AYGGGMKKSC TSFDGSCMEQ VCMSTTDVAV 360 YIVDAHMWGF REACVEHHLQ KGQGVAGRAF LSRNACFCRD ISQFRKTEYP LVHYARMFRL 420 TSSFAICLQS THTGNDDYIL EFFLPPSITD SSEQQTLLGS ILAIVKGHCQ NLKVASGIGL 480 AEEGIVEIVQ ASINEGLDSR FECIQIPRSV EPLPGSSLPN REEIVHLDPA KPQLMVDINA 540 INDERNAVHK GGQNNISVPE NKDMKKTSER KRGKTEKSIS LEVLQQYFAG SLKDAAKSLG 600 VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKLVIESV QGGEGAFGLS PLTTSPLTGA 660 VGSNSRPFTS SQPYEVQGEK KDSPNSSSPG REGQAGIGDP DIGRGSNSSK TGSGSREAST 720 GTPTSHGSCQ GSPANGSAMA KEPFVSTMHE QFAEVDRSPE SAFRPPDEVY VPVLCSIPDA 780 LLITEPEEPS RGMQLEDAGS SKDLRNLCPL ADLTVDEQVP EVFWTDPPYP DSAPKQFIPT 840 LAYTVPHNTS LREMRSVTIK AAYKDDIIRF RISMSSCIVD LREEVAKRLK LEVGTFDMKY 900 MDDDLEWVLI ACDADLQECM EICRSSGSNM IRLSVHDILP NLGSSCESTD E*

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MSDPEDDRAP SIFPKSKSLD ASSLMDFDID VPWPLDQIHF LSNPTSPLFF SPADDPCSPL  60
WAFSDVNNND KLARALPDPA QSVSDTNPVA QKRKENEDNR IVPSPFSGLE PNADGYFLIK  120
ERITRALRYL KESSDQHVLA QVWAPVWDGN RYVLTTSGQP FVLDPHDGLH QYRMVSLMYM  180
FSVDGENDGV LGLPGRVFQQ KLPEWTPNVQ YYSIKEYPRL DHAQHYNVQG TLALPVFEPS  240
GRSCIGVIEL IMTSQKINYA PEVDKICKAL EAVSLKSSEM LDHTSTQIQI RNEGRQTALT  300
EILEILTMVC ETHKLPLAQT WVPCMHRNVL AYGGGMKKSC TSFDGSCMEQ VCMSTTDVAV  360
YIVDAHMWGF REACVEHHLQ KGQGVAGRAF LSRNACFCRD ISQFRKTEYP LVHYARMFRL  420
TSSFAICLQS THTGNDDYIL EFFLPPSITD SSEQQTLLGS ILAIVKGHCQ NLKVASGIGL  480
AEEGIVEIVQ ASINEGLDSR FECIQIPRSV EPLPGSSLPN REEIVHLDPA KPQLMVDINA  540
INDERNAVHK GGQNNISVPE NKDMKKTSER KRGKTEKSIS LEVLQQYFAG SLKDAAKSLG  600
VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKLVIESV QGGEGAFGLS PLTTSPLTGA  660
VGSNSRPFTS SQPYEVQGEK KDSPNSSSPG REGQAGIGDP DIGRGSNSSK TGSGSREAST  720
GTPTSHGSCQ GSPANGSAMA KEPFVSTMHE QFAEVDRSPE SAFRPPDEVY VPVLCSIPDA  780
LLITEPEEPS RGMQLEDAGS SKDLRNLCPL ADLTVDEQVP EVFWTDPPYP DSAPKQFIPT  840
LAYTVPHNTS LREMRSVTIK AAYKDDIIRF RISMSSCIVD LREEVAKRLK LEVGTFDMKY  900
MDDDLEWVLI ACDADLQECM EICRSSGSNM IRLSVHDILP NLGSSCESTD E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna25113.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301816.2	0.0	PREDICTED: protein NLP6
Refseq	XP_011465369.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2P6P3X3	0.0	A0A2P6P3X3_ROSCH; Putative transcription factor Nin-like family
STRING	XP_004301816.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	mrna25113.1-v1.0-hybrid

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]