PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09647.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8207.87 Da    PI: 10.5244
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09647.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.72.9e-391175670
                     S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                             v +kG+nPGlivllvv gll++flvgny+lyvyaq+++PP+kkkPvskkklk+e+lkqGv++PGe
  mrna09647.1-v1.0-hybrid 11 VGTKGFNPGLIVLLVVVGLLVIFLVGNYALYVYAQRTIPPKKKKPVSKKKLKKERLKQGVSAPGE 75
                             567*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.1E-371275IPR006779DNA binding protein S1FA
ProDomPD0190130.0071475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MADEVPPFDD VGTKGFNPGL IVLLVVVGLL VIFLVGNYAL YVYAQRTIPP KKKKPVSKKK  60
LKKERLKQGV SAPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09647.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304409.15e-46PREDICTED: DNA-binding protein S1FA-like
SwissprotP425535e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA32e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_004304409.12e-45(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355