PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08765.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 353aa    MW: 39095.8 Da    PI: 9.1098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08765.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.7e-55131401128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+t
  mrna08765.1-v1.0-hybrid  13 LPPGFRFHPTDEELITYYLMNKISDATFTG-RAIADVDLNKCEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTT 97 
                              79*************************999.89***************99999********************************* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              gkdke++++ ++elvg+kktLvfy+grap+gek++Wvmheyr+
  mrna08765.1-v1.0-hybrid  98 GKDKEIFNSaTSELVGMKKTLVFYRGRAPRGEKSNWVMHEYRI 140
                              *******9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-647161IPR003441NAC domain
PROSITE profilePS5100560.80913161IPR003441NAC domain
PfamPF023658.6E-2914140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSTGDHANKE DNLPPGFRFH PTDEELITYY LMNKISDATF TGRAIADVDL NKCEPWELPA  60
KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSATSE LVGMKKTLVF  120
YRGRAPRGEK SNWVMHEYRI HSKSSFRPSK DEWVVCRVFQ KSAGVKKYPP SNQSSSSSRG  180
ANPYNMELMG PSVNVVQSPI MQLGHEHQFP NYGRSYMTNA EMAELSRVLR GGGVATGSTS  240
SPMNLPLLQP QFSYPNLGGG GFTISGLNLN LGGPSTQSNL RPMSGIHQAH QAMNNHQDVA  300
NSSMMTSAGG AVGQDQAGYG NIDMNNGNVP AGNRYMNMVD QCVDLDHYWP SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-551216716171NO APICAL MERISTEM PROTEIN
1ut4_B7e-551216716171NO APICAL MERISTEM PROTEIN
1ut7_A7e-551216716171NO APICAL MERISTEM PROTEIN
1ut7_B7e-551216716171NO APICAL MERISTEM PROTEIN
4dul_A7e-551216716171NAC domain-containing protein 19
4dul_B7e-551216716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08765.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291275.10.0PREDICTED: NAC domain-containing protein 76
TrEMBLA0A2P6PZU40.0A0A2P6PZU4_ROSCH; Putative transcription factor NAM family
STRINGXP_004291275.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-115NAC domain containing protein 38