PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna02674.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 796aa    MW: 88721.6 Da    PI: 5.8679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna02674.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-084835211854
                              HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  mrna02674.1-v1.0-hybrid 483 MFQNflHPYPKDSEKHLLAVKSGLTRSQVSNWFINARVR 521
                              5777679******************************88 PP
2BELL712.1e-23356423169
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 
                              +rqe++ kka Ll ll+++d+ Y+q+v++++tv+s+F+a+++ ++  +++++Alk+iS  +++L+++i+
  mrna02674.1-v1.0-hybrid 356 QRQEIETKKANLLALLQMLDDCYNQCVDEIHTVVSAFHAATDTDP-SIHARFALKTISIFYKNLRERIS 423
                              699******************************************.9********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.3E-21299424IPR006563POX domain
PfamPF075267.8E-23305423IPR006563POX domain
PROSITE profilePS5007111.11462525IPR001356Homeobox domain
CDDcd000863.56E-11465526No hitNo description
SMARTSM003891.3E-5465529IPR001356Homeobox domain
SuperFamilySSF466894.28E-15466534IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25468531IPR009057Homeodomain-like
PfamPF059202.8E-14482521IPR008422Homeobox KN domain
SuperFamilySSF567846.33E-19524707IPR023214HAD-like domain
TIGRFAMsTIGR014891.4E-41558716IPR006384Pyridoxal phosphate phosphatase-related
TIGRFAMsTIGR014881.8E-19559702IPR006383HAD-superfamily hydrolase, subfamily IB, PSPase-like
PfamPF068882.5E-68559751IPR016965Phosphatase PHOSPHO-type
Gene3DG3DSA:3.40.50.10001.0E-7579706IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0016791Molecular Functionphosphatase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MMDDQLFNVP TDVTARNAVM VDGLGPHTTM NSFAQSYSLD LNDQNHFISV LPMLPAIDGD  60
SVIGCHSSHL HDTNSDAIDE SYRRNNLREP LFGSSSFYDH SVFQGVPDSA AFSTLFPASD  120
NLQEDLNNLA ISATPMHPSE IYVSNAGSGI PSFVLAPPVN YGYDEILGSI NTQQWELNKY  180
AAAPSEPGVK TPARTTGLQT YSPSIGNLDP NGWSSPNGAN YEMTYHSYSS PKSSNELALT  240
LATSTSSIVN GMHIRDQCSD IDCSGIGQPC LNQTRFGSDQ QASCSSEEPS PSFGSCKPPQ  300
LSQIICGSRY FHVIQEILTQ IASYSLENLD QSSYSSLGVH AGLDSRFEVH DEPAQQRQEI  360
ETKKANLLAL LQMLDDCYNQ CVDEIHTVVS AFHAATDTDP SIHARFALKT ISIFYKNLRE  420
RISTYCLSVS EQFSPESLTE SETSFDEIQK HLALQHMKKK EHQIWRPQRG LPEKSVSVLR  480
AWMFQNFLHP YPKDSEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM YADMNRRKAR  540
QNENTERNRR SLHHISINNQ KFHDRMMTEL HHRGKTIEDI EECLKKVPLH PSIASAIESV  600
HALGCDLRIV SDANVFFIET ILKHHGLLDY FSEINTNPGF VDEQGRLRIL PYYDFSSSSH  660
GCNICPSNMC KGLVMEKIRA SVSADGKKQL VYVGDGTPDF CAGLKLEEGD VLMPRKDFPI  720
CDLISANPLL IKAKIHEWSN WDELSTNLLS TVNNALIDES AKTDQLVPLC KYQNSSISVT  780
AHEALQKALP VSPPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15471529563Homeobox protein Meis2
3k2a_B6e-15471529563Homeobox protein Meis2
4xrm_A6e-15471529563Homeobox protein Meis2
4xrm_B6e-15471529563Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1539549RQNENTERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna02674.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1850661e-169HQ185066.1 Fragaria vesca clone VT_465_R T-DNA insertion flanking sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292788.20.0PREDICTED: uncharacterized protein LOC101305635
TrEMBLA0A2P6Q1620.0A0A2P6Q162_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004292788.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-101homeobox gene 1