PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001501.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 617aa    MW: 68604.2 Da    PI: 7.5488
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001501.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.81.9e-106894935
                            GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    TplWR+gp  ++ LCnaCG ++r kg+
  FANhyb_rscf00001501.1.g00003.1 68 TPLWRNGPPEKPVLCNACGSRWRTKGT 94
                                    9*******88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-459108IPR000679Zinc finger, GATA-type
CDDcd002022.69E-1164107No hitNo description
SuperFamilySSF577168.08E-66698No hitNo description
Gene3DG3DSA:3.30.50.104.2E-76894IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-86894IPR000679Zinc finger, GATA-type
PfamPF139196.9E-11354448IPR028020ASX homology domain
PfamPF165505.5E-10375441IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSAFVTSV SLYFYSSLVK IDTRLFCLLR KTSWAAHNEI ASGVETMFMD  60
NANSCYCTPL WRNGPPEKPV LCNACGSRWR TKGTLVNYTP LHARAEPDDY EDHRVSRMKI  120
MSINKNKEVK LVKRKQHPDS VGVGADYSHG FRKVVDEDTS NRSSSGSAVS NTESCAHFGS  180
ADASDLTARR IAEIPVNMAC VLKFGDAFAS RSGNGPAQSM VWDSTVPSRK RTCVGRPKQS  240
PVEKLTKDLY TILHEQQQSS YFSGSSEEDL LFESETPMVS VEIGHGSVLI RHPSSIIREE  300
ESEASSLSVD NLQCHRNEAY SCSASLLVHN NKGVNMSSTV IGKMNSPAGQ GMQQEKRDKS  360
QHDNLQILGN HNSPLRHIDL NDIVNYEEFT SQLTNEEQQQ LLKHLPPADV KFPYSLKNMF  420
DSPQFRENLT SFQQLLAEGV FDISLPGAKS EDCKTLKRLV LSNSSKSKWV ERYHLIKKCK  480
TTPGKSVVSG SNFTTSSNFR QVKRLRDNEI QSFPDVKMVM KSPKRVIMKG GYENKDILDY  540
DGSCFSPRSL FALPPDGSSL MLDSMSFVEE SSDQDLLLDV PSNGSYPQAE LLHPTLSFGS  600
QQASTSSSSI YPHLLHP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300335.10.0PREDICTED: GATA transcription factor 26-like isoform X1
TrEMBLA0A2P6P8W20.0A0A2P6P8W2_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004300335.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-138GATA transcription factor 26