PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001418.1.g00002.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8791.82 Da    PI: 11.2627
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001418.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA122.41.6e-381880870
                            S1FA  8 akGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                    +kG+nPGlivllvv gll++flvgny+lyvyaq+++PP+kkkPvskkklk+e+lkqGv++PGe
  FANhyb_rscf00001418.1.g00002.1 18 TKGFNPGLIVLLVVVGLLVIFLVGNYALYVYAQRTIPPKKKKPVSKKKLKKERLKQGVSAPGE 80
                                    69************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046894.3E-371880IPR006779DNA binding protein S1FA
ProDomPD0190130.0041980No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MRIKSAALRI CCSRLPGTKG FNPGLIVLLV VVGLLVIFLV GNYALYVYAQ RTIPPKKKKP  60
VSKKKLKKER LKQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304409.15e-37PREDICTED: DNA-binding protein S1FA-like
SwissprotP425534e-15S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A2P6RAP52e-35A0A2P6RAP5_ROSCH; Putative transcription factor S1Fa-like family
STRINGXP_004304409.12e-36(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355