PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000768.1.g00004.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 1392aa    MW: 155192 Da    PI: 8.2412
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000768.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.5e-15148180133
                            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                                     C++Cg ++Tp+WR+gp g  tLCnaCG++y + 
  FANhyb_rscf00000768.1.g00004.1 148 CTHCGISQTPQWREGPLGRNTLCNACGIRYISG 180
                                     *****************************9665 PP
2GATA283.1e-0911191146128
                            GATA    1 CsnCgttkTplWRrgpdgnktLCnaCGl 28  
                                      C++C   ++p W   p g++tLC aCGl
  FANhyb_rscf00000768.1.g00004.1 1119 CQHCADEQSPRWLGVPLGPRTLCHACGL 1146
                                      ***************************9 PP
3GATA467.4e-1513511382132
                            GATA    1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32  
                                      C+nC + +TplWR+gp g+ktLCnaCGl++ k
  FANhyb_rscf00000768.1.g00004.1 1351 CHNCWAEETPLWRSGPMGSKTLCNACGLRWYK 1382
                                      ******************************66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.477142177IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-11142192IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13144205No hitNo description
Gene3DG3DSA:3.30.50.102.4E-12146177IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.56E-12148197No hitNo description
PROSITE patternPS003440148173IPR000679Zinc finger, GATA-type
PfamPF003201.1E-12148179IPR000679Zinc finger, GATA-type
SMARTSM004010.00411131173IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-511141148No hitNo description
Gene3DG3DSA:3.30.50.101.2E-411141148IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.7E-711191147IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-412471280IPR013088Zinc finger, NHR/GATA-type
SMARTSM004010.03212911340IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-1113441386No hitNo description
PROSITE profilePS5011413.17813451378IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-1013451391IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.1E-1413491382IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.06E-1013501384No hitNo description
PROSITE patternPS00344013511376IPR000679Zinc finger, GATA-type
PfamPF003202.7E-1213511382IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1392 aa     Download sequence    Send to blast
MVSLDPDDFL ADLADVPDHP SRPFPEKLAE EEELEWISNK ESFPSVETCM LPEEPPGLRK  60
AISNAEQGNG ALSLPEMPCR KTKHDNAKAK RFIYKSGRCC AEEESPKVQS IKSDNVKKRI  120
KSDKVKSSKS DKVKSIESDK VNSIKRMCTH CGISQTPQWR EGPLGRNTLC NACGIRYISG  180
RLCPEYRPAN SPTFSQGLHS NNHRKIMEMR NQIFGIKGTV ANPVYKCINN EGTMTVEKLK  240
NIFPSVATRN IVEQPSRSVI AEQQSPISVL ENNTNSSTTL VSHQPPNKVL RQQHLFSNQL  300
NNKHNQEDTA KLEVEINSTI LMSSHGSVKL SYKVPSKVLE QQQLFSCQPT NKCRKKNTVE  360
LKNERINATL MSSCDNLEPP HQAPSEFLEH HQLFNDQPIN NCNNKYTAKV DLTMKAGNIR  420
ERTLLRSAAL MSSSESVEQQ QLVYNPANNK PNKNDTSKVE IEGKNTTSQC RPHELYAALM  480
SSSESVEQQQ LVYNPANNKP NKNDTSKVEI EGKNTTSQCR PHELYAALMS SSESVEQQQL  540
VYNPANNKPN KNDTSKVEIE GKNTTSQCRP HELYAALMSS SESVEQQQLV YNPANNKPNK  600
NDTSKVEIEG KNTTSQCRPH ELYAALMSSS ESVEQQQLVY NPANNKPNKN DTSKVEIEGK  660
NTTSQCRPHE LYAALMSSSE SVEQQQLVYN PANNKPNKND TSKVEIEGKN TTSQCRPHEL  720
YAALMSSSES VEQQQLVYNP ANNKPNKNDT SKVEIEGKNT TSQCRPHELY SSWFITQLIT  780
SRTRMTLPKW RLRERSTNSS AALMSSSESV EQQQLVYNPA NNKLNKNDTS KVEIEGKNTT  840
SMSSYGTLAL PHHVPSKFLG PQPLFFDQPN NNCNKKDTDI VGIVVKCQNC GDELSPQQWE  900
GALGPQTLCL SCMVAKCTPR KKRSTSLASN KKRKKEDIAK VEMAVKPGDK CTNSTVVLMN  960
SKKDPFIDTS NISEQPDFIA IAEQQTPASV FESSTNSSMT LVSSSGTIKP LNQAPSVFLG  1020
QQNQFCPLGP LELPNLALNE LMEQQQLFCN QANNKANKKD TVRVESEGNS TTLMSPCETS  1080
KPLHQAQSKF LGQEQLFCNQ ANNETNKENT AKVESEGKCQ HCADEQSPRW LGVPLGPRTL  1140
CHACGLAKCA AQQQKSIAVE VGEMPCILPT GKITNSTFTL PVLDEFYFLQ KPSDIANAEH  1200
QNLSSGLETS KNNSIDLMSS CRIKFPHRAR SKGLCRRRST IPGQQVQIGA NCMQCGKQTN  1260
RWRMGPLGPT TLCNVCGNKY QPLWGISSVI VNIAQVCQHC ESEEATEWLM CPVGPKALCA  1320
ACYHWIKYFC NQTNNNPDRK ASTEVDNGRK CHNCWAEETP LWRSGPMGSK TLCNACGLRW  1380
YKFGDLCRQP SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1920934KKRSTSLASNKKRKK
2930934KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011471046.10.0PREDICTED: GATA zinc finger domain-containing protein 5-like isoform X2
TrEMBLA0A2P6QRU40.0A0A2P6QRU4_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004309769.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3422722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-29GATA transcription factor 5