PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462931853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 954aa MW: 105239 Da PI: 6.609 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.4e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l+ 462931853 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEKSQLL 222 99*****************************96555444..8************************************************..4567778* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 462931853 223 LGIRRA 228 **9997 PP | |||||||
2 | Auxin_resp | 120.1 | 1.7e-39 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++ + dldpvrW+nS+Wr+L+ 462931853 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITCIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-44 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-41 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.65E-20 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.266 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-34 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.3E-8 | 827 | 924 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.665 | 838 | 931 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.89E-9 | 853 | 917 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 954 aa Download sequence Send to blast |
MKDHGSGGVT PSPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMNK 60 ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM QPPAQELIAK DLHDISWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITCIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWDIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW 420 MAMQQNPQML TGAAPAMQSQ YLTSNALGMQ DGTGSANEDP TKRLHIQAQN IGLPNSQAGS 480 KILQPSSSQL QQLGLPKSPT QRPGLPGLTT VGSLQQSQLT HTPQVQQTAD FQQALLQGQQ 540 PQLQQLSQSD LQLQLLQKIQ QQNLLSQLNP QHQSQLIQQL SQKSQEILQQ RVLQHQFGAA 600 DAMGQQLKHL QQTPLNHIAG SLTAQQLVRS HSALESGEPS SSTAPSGSRI SPINSLSRAH 660 QGSRNLPEMP STPQMDHLLQ EIQSKPDNRP KTDMQGSKET THVPNRHPAS DQLDASSATS 720 FCLDESPREG FSFPPVCLDS SVQVDPRDNF LISENVDTLM PDALLSRGMS SGKGICNLPS 780 AQRDHRDVEN ELSSAAFSSQ SFGVPDISFK PGSSSDVAVT DAGMPSQSLW NSQSQRMRTF 840 TKVQKRGSVG RSIDITRYRG YDDLRHDLAC MFGIQGQLED PYRTDWKLVY VDHENDILLV 900 GDDPWEEFVS CVKSIKILSS VEVQQMSLDG DLGCIPPQTQ ACSASDDANA WRSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 17 | 356 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462931853 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727741 | 0.0 | KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305688.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | A0A453R177 | 0.0 | A0A453R177_AEGTS; Auxin response factor | ||||
STRING | Sb10g006440.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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