![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462929323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 444aa MW: 50137.3 Da PI: 9.5444 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.8 | 3.2e-17 | 11 | 106 | 1 | 85 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk ++ + + +rtgC a+l++k+ + +++t++ H 462929323 11 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdeagagagtsSSPVPPRCPDSRTGCLASLTIKLVPsANAFRITDFCPSH 106 6*****************99997666.****************9999888888877644444458899**************98999*****99888 PP | |||||||
2 | FAR1 | 70.4 | 4.2e-22 | 137 | 236 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFsvr+s++k++ g i++r fvCs+eg +++ k++ + + r + trtgC+a++++k + +++v+k+ eHnH+ 462929323 137 FYNRYAEHVGFSVRRSYKKRK--RGVIVSRIFVCSREGVSDRAKQEgittgstnggtglSGTPRPGPPPTRTGCQARMVIKITPCRTYRVAKFFPEHNHP 234 9*************9976665..999****************9999********999987888888999******************************* PP FAR1 89 la 90 la 462929323 235 LA 236 97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-14 | 11 | 106 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.2E-18 | 137 | 236 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MYFETEDDAY EFYKAYAARL GFVVRKSNKS KNSRHTVTRR LFVCSKQGFR QEPKKPQDEA 60 GAGAGTSSSP VPPRCPDSRT GCLASLTIKL VPSANAFRIT DFCPSHHSIA TMASLPDPKD 120 GPYPDMHFET EEDAYVFYNR YAEHVGFSVR RSYKKRKRGV IVSRIFVCSR EGVSDRAKQE 180 GITTGSTNGG TGLSGTPRPG PPPTRTGCQA RMVIKITPCR TYRVAKFFPE HNHPLANPDN 240 RTMFSADILT TLRKDNLIND LKKELSEQED ILQFLRRYEA ILEEHRSKKL HADVDSSQVT 300 LPIPSLRMLK QASSAYTPEA FKAIPRWEIM LLLQAVKQFL LEETNILTIQ HKQEELLRQQ 360 TLHLNPRIIC GPSCPILRYC ACGYEPILGT IMRSSVAKQH PYGQRTTWRG DSSPYSTMSS 420 AQKLACEVHS LHPTIDRIGV IYSF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462929323 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK119387 | 1e-70 | AK119387.1 Oryza sativa Japonica Group cDNA clone:001-132-C03, full insert sequence. | |||
GenBank | AP003956 | 1e-70 | AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07. | |||
GenBank | AP004259 | 1e-70 | AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02. | |||
GenBank | AP014963 | 1e-70 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-70 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804639.1 | 1e-135 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025804640.1 | 1e-135 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1E5WBG3 | 1e-172 | A0A1E5WBG3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J10702.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18960.1 | 3e-16 | FAR1-related sequence 12 |