PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462918339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ARF | ||||||||
Protein Properties | Length: 961aa MW: 105897 Da PI: 6.5111 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.7 | 2.2e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l++ 462918339 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfMMQPPA-QELIAKDLHDMSWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFI--RDEKSQLLL 223 99*****************************9555544.38************************************************..4567778** PP EEE-S CS B3 95 kvfrk 99 +++r+ 462918339 224 GIRRA 228 *9997 PP | |||||||
2 | Auxin_resp | 123.1 | 2.1e-40 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m feteds rr++Gt++g+ dldpvrW+nS+Wr+L+ 462918339 253 AAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.1E-43 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-41 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.54E-20 | 126 | 227 | No hit | No description |
SMART | SM01019 | 7.0E-24 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.421 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-35 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.7E-8 | 832 | 924 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.665 | 838 | 931 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.38E-9 | 853 | 917 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 961 aa Download sequence Send to blast |
MKDHGSGGLT PSPGEGEKKA INSELWHACA GPLVSLPPVG SLVVYFPQGH SEQVAASMNK 60 ELDTIPSYPS LPSKLICKLL SLTLHADSET DEVYAQMTLQ PVNKYDRDAM LASELGLKQN 120 KQPTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFMM QPPAQELIAK DLHDMSWKFR 180 HIYRGQPKRH LLTTGWSVFV STKRLLAGDS VLFIRDEKSQ LLLGIRRASR PQPALSSSVL 240 SSDSMHIGIL AAAAHAAANS SPFTIFYNPR ASPSEFVIPL AKYNKALYTQ VSLGMRFRML 300 FETEDSGVRR YMGTITGIGD LDPVRWKNSH WRNLQVGWDE STASERRTRV SIWDIEPVAT 360 PFYICPPPFF RPKLPKQPGM PDDENEVESA FKRAMPWLAD DFALKDVQNA LFPGLSLVQW 420 MAMQQNPQML TASAPAMQSQ YLASNALGMQ DGTGSANEDP TKRLHIQAQN IGLPNSQAGS 480 KILQPSSSQL QQLGLPKSPT QRPGLPGLTT VGSLQQPQLT HTPQVQQTAD FQQALLQGQQ 540 PQLQQLSQSD LQLQLLQKIQ QQNLLSQLNP QHQSQLIQQL SQKSQEILQQ QVLQHQFGGA 600 DAMGQQLKHL QQTPLNHIAG SLTAQQLVRS HSALESGEPS SSTAPSGSRI SPINSLSRAH 660 QGSRNLPEMP STPQIDHLLQ EIQSKPDNRP KTDMQGSKET THVPNRHPAS DQLDASSATS 720 FCLDESPREG FSFPPVCLDS SVQADPRDNF LIAENVDTLM PDALLSRGMS SGKDLCNLPS 780 AQRDHRDVEN ELSSAAFSSQ SFGVPDMSFK PGSSSDVAVT DAGMPSQGLW NSQSQRMRTF 840 TKVQKRGSVG RSIDITRYRG YDDLRHDLAC MFGIQGQLED PYRTDWKLVY VDHENDILLV 900 GDDPWEEFVS CVKSIKILSS VEVQQMSLDG DLGCIPPQTQ ACSASDDANA WRSAAQPVIS 960 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-166 | 17 | 356 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462918339 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727741 | 0.0 | KJ727741.1 Zea mays clone pUT5682 ARF transcription factor (ARF27) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305688.1 | 0.0 | auxin response factor 16 isoform X1 | ||||
Swissprot | A3B9A0 | 0.0 | ARFP_ORYSJ; Auxin response factor 16 | ||||
TrEMBL | A0A453R177 | 0.0 | A0A453R177_AEGTS; Auxin response factor | ||||
STRING | Sb10g006440.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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