PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10025845m

Common Name

EUTSA_v10025845mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SRS

Protein Properties

Length: 300aa MW: 32443.4 Da PI: 6.3376

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10025845m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223.6	3.8e-69	80	228	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++ + ++ +kr+r+ +ss++l+s + Thhalv10025845m 80 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTYGGGDGSGSSVPKRHRDI-----PGTSSSRLPSDS 168 67899*********************************************************9******97.....566778999999 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + e+e +s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+ Thhalv10025845m 169 TGLEMEEASFPPEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 228 9*************************8899**********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.7E-62	83	227	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-27	85	127	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.1E-28	178	226	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSGIFSLGGN NNNNGEEEEE ENQQQQKTNW VWYRNTNPSS SLWQIPPEQQ MLMHHHPQQQ 60 SLDLYPGHQI DISDLATSSR SITISCRDCG NQAKKDCTHM RCRTCCKSRG FDCSTHVRST 120 WIPVARRRER QQQLHMSTYG GGDGSGSSVP KRHRDIPGTS SSRLPSDSTG LEMEEASFPP 180 EVSSDALFRC VKMSGVDDGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSY ISGNSGGSDH 240 QSSSAGGGNP FKAMADGGGG GGGSSAMFVD PNSGGYYSSN MTTMFVPPGT QFYQNPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10025845m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205265	0.0	GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412014.1	0.0	protein SHI RELATED SEQUENCE 2
Swissprot	O65517	1e-140	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	V4ME11	0.0	V4ME11_EUTSA; Uncharacterized protein
STRING	XP_006412014.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-125	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thhalv10025845m
Entrez Gene	18030746

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]