PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025713m
Common NameEUTSA_v10025713mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 326aa    MW: 36547.1 Da    PI: 5.6634
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025713mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-08245340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     e +C+ ++ +++  +C++++  lC +C ++ H+       Ht++
  Thhalv10025713m  2 EARCDYCGTEHALVYCKSDSAKLCLNCDVYVHSAnplslrHTRS 45
                     579*****************************668888888876 PP
2CCT60.84.6e-21278321144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Thhalv10025713m 278 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKSG 321
                      99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.599147IPR000315B-box-type zinc finger
PfamPF006431.4E-6345IPR000315B-box-type zinc finger
CDDcd000211.23E-6447No hitNo description
PROSITE profilePS5101714.436278320IPR010402CCT domain
PfamPF062033.2E-16278320IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEARCDYCGT EHALVYCKSD SAKLCLNCDV YVHSANPLSL RHTRSLICEK CLSQPALVNC  60
LDEKVSLCQG CHWTASNCSG LGHRIQDLKL YSGCPSPVDY AKIWYSILDH SFSDSVSPFN  120
DCTKMKELKD WDGLLTSTVT QTKNLKDHSS FFSKEYNLPN MIEEEQECSG LDLCEGIDLD  180
DLPLNFNASD DIMGCSSLEH TKSYQYDEDS FEEEKSIDLS SLLRPALSEN VVPSLSLPMS  240
NITGESSATD YQDCGISSGF LIGNSPWESN IEVSPKSRDE AKKRYKQKKS KRMFGKQIRY  300
ASRKARADTR KRVKGRFVKS GETFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10025713m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004815.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233791e-164COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLV4MRZ40.0V4MRZ4_EUTSA; Uncharacterized protein
STRINGXP_006414550.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.11e-165B-box type zinc finger protein with CCT domain