PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023637m
Common NameEUTSA_v10023637mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 272aa    MW: 30810.3 Da    PI: 8.6111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023637mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-1285137155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++++h   Er+RR ++ s f  Lr+llP       ++K   a+ + +Av+YIk+L+
  Thhalv10023637m  85 KKMKHRDTERQRRIEVSSLFKSLRSLLPFqY---IQGKRATADHVCQAVNYIKDLE 137
                      6899*************************66...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1382157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-1082141No hitNo description
PROSITE profilePS5088813.71384136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-1085154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-985137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSKKVTNQTL RLSSYQENMD FVPSMFMPDS TDEDGLLFSD SFVLSPIMSY QNYDDCNPIT  60
DKNGGSNKKR SLCEDNKGND DREVKKMKHR DTERQRRIEV SSLFKSLRSL LPFQYIQGKR  120
ATADHVCQAV NYIKDLEKRI KELNEKRNRI QKSVRGTVTI HPYTEECTSS SLSTSSLSTS  180
SSRCSCIDDK HMTVVIIPCL VGVEIIISCC LGRKKSCLSS VLQILTQEVR LSVVSCLSTR  240
VQQRFMHTIV SQVDDGIKIN ISELKDKILN M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023637m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391801.10.0transcription factor bHLH125
SwissprotQ9LQ081e-120BH125_ARATH; Transcription factor bHLH125
TrEMBLV4KGY20.0V4KGY2_EUTSA; Uncharacterized protein
STRINGXP_006391801.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-121bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]