PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020880m
Common NameEUTSA_v10020880mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 396aa    MW: 43423.8 Da    PI: 6.4914
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020880mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07245340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     e+kC+++   ++ ++C++++  lC +C ++ H+       Ht++
  Thhalv10020880m  2 EPKCDHCTTAQAVIYCKSDSAKLCLNCDVHVHSAnplsrrHTRS 45
                     689******99*********************667888889876 PP
2CCT61.62.5e-21338381144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a+lRYkeK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Thhalv10020880m 338 RNQAKLRYKEKKLKRTFGKQIRYASRKARADTRKRVKGRFVKAG 381
                      99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.314147IPR000315B-box-type zinc finger
SMARTSM003365.1E-11147IPR000315B-box-type zinc finger
PfamPF006433.2E-6245IPR000315B-box-type zinc finger
CDDcd000212.48E-6347No hitNo description
PfamPF062039.2E-16338380IPR010402CCT domain
PROSITE profilePS5101714.376338380IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEPKCDHCTT AQAVIYCKSD SAKLCLNCDV HVHSANPLSR RHTRSLICEK CFSQLGVIRC  60
QDENVSYCQR CHWHTSNCSV LGHRLQSLNP FSGCPSPAEF VRMWSSILEP PVSGLVNPFV  120
ASLPLSNPNN AIFGMAKINE LDRLVGSSYS MVPHNISYTQ NLSDQSSFFS VESKGCPDLV  180
LKLEEGEEDI CEGLNLDNAP LNFDVGDDII GCSSQEHIES DHTVPNCILV DKNNTSVTAS  240
NFTIGDNALE ASSPGQQDCT SYHQSGPLQM NINTGLALPL PASPVLFGQI HPSMSLTISN  300
ITGESSAADY QDCGMSPGFI MSDSPWESNL EGRCPQARNQ AKLRYKEKKL KRTFGKQIRY  360
ASRKARADTR KRVKGRFVKA GDNYDYDPSS PTTNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020880m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406230.20.0zinc finger protein CONSTANS-LIKE 12
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W20.0V4M5W2_EUTSA; Uncharacterized protein
STRINGXP_006406230.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]