PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019655m

Common Name

EUTSA_v10019655mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SRS

Protein Properties

Length: 346aa MW: 38285.7 Da PI: 6.7426

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019655m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	227.6	2.3e-70	119	286	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrel....... 78 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+ + e Thhalv10019655m 119 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetqnanakrvR--------EAnggendd 204 7899*****************************************************999988866444444441........445555555 PP DUF702 79 ...kskkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 +s +al+ t++++a+s+ le s+ lP+evss+avfrcvrvss+++ +++e+aYqtav+igGhvfkGiLydqG++e Thhalv10019655m 205 kdhSSGGGTALAITRVVNANSNPGLELSQnLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDE 286 5548888999*******999998766***************98535567*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.7E-65	122	285	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.1E-28	124	166	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-26	235	284	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHQQQD KSNNYLYLYK DEIYNNNKGF EIWPPQYFQQ 60 QQQHVSAPAN FYSFGMVPSG SSSNNNNNNN NNNNNNNRSR SLYFNVVSDH EPGGFTVTRQ 120 GGMNCQDCGN QAKKDCPHMR CRTCCKSRGF HCQTHVKSTW VPAAKRRERL AQLASLQHHS 180 ASSRETQNAN AKRVREANGG ENDDKDHSSG GGTALAITRV VNANSNPGLE LSQNLPPEVS 240 SPAVFRCVRV SSIEEDEDDQ EYAYQTAVNI GGHVFKGILY DQGPDEDHQL NLLASTATTT 300 NAEETAAKTA VTVAGNNNNG LILDPSSLYP AQLNSFIAGT PFFTPP

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHHQ VDKDHHQQQD KSNNYLYLYK DEIYNNNKGF EIWPPQYFQQ  60
QQQHVSAPAN FYSFGMVPSG SSSNNNNNNN NNNNNNNRSR SLYFNVVSDH EPGGFTVTRQ  120
GGMNCQDCGN QAKKDCPHMR CRTCCKSRGF HCQTHVKSTW VPAAKRRERL AQLASLQHHS  180
ASSRETQNAN AKRVREANGG ENDDKDHSSG GGTALAITRV VNANSNPGLE LSQNLPPEVS  240
SPAVFRCVRV SSIEEDEDDQ EYAYQTAVNI GGHVFKGILY DQGPDEDHQL NLLASTATTT  300
NAEETAAKTA VTVAGNNNNG LILDPSSLYP AQLNSFIAGT PFFTPP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019655m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205267	0.0	GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390296.2	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	V4KCT5	0.0	V4KCT5_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006390296.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-165	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Thhalv10019655m
Entrez Gene	18008425

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]