PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019625m
Common NameEUTSA_v10019625mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 429aa    MW: 48610.6 Da    PI: 6.4291
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019625mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11256312155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  + ++  ++ k  + g +  +e+Aa+a++ a+ k++g
  Thhalv10019625m 256 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQGG-YEEEEKAARAYDLAAMKYWG 312
                      78*******************433.4455444777766.5555**************98 PP
2AP234.84e-11344389755
              AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Thhalv10019625m 344 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFKG 389
                      8999********988532...5**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-18256322No hitNo description
SuperFamilySSF541712.29E-14256322IPR016177DNA-binding domain
PfamPF008471.1E-8256312IPR001471AP2/ERF domain
PROSITE profilePS5103217.332257320IPR001471AP2/ERF domain
SMARTSM003805.6E-22257326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-13257321IPR001471AP2/ERF domain
PRINTSPR003674.7E-6258269IPR001471AP2/ERF domain
PROSITE profilePS5103216.384338397IPR001471AP2/ERF domain
CDDcd000189.07E-21344399No hitNo description
SMARTSM003801.6E-26344403IPR001471AP2/ERF domain
PfamPF008474.5E-6344388IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-14345399IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-15345397IPR001471AP2/ERF domain
PRINTSPR003674.7E-6379399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MNKWLGESLT PHLRIPDREE EEDEEEHRQD GICGFTDQQK AILPLRSDGS LFFTDPLTHH  60
PPAWRYDINH DDHHNHGQEV PKLEDFFANS HHQTECPIDQ NQTNVNCTTL VDRLNPPGYL  120
LHEQTVVTPQ YPNLSLDYGA FEKDGSVSVF KSWLRQGTPT FPLSNIYVAD EEGGTSNNTS  180
HFGNEETHDY NNNGSMLSLA MSHGVGSDMI NKSNVSVPVE EPVKVDDEKG KRLTSKSVVK  240
ESVPRKSANS VGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ GGYEEEEKAA  300
RAYDLAAMKY WGPTSHLNFP PSNYEKEMDE LKNMTRQEFV AMLRRHHQHG RWQARIGRVA  360
GNKDLYLGTF STQEEAAEAY DIAAIKFKGV NAVTNFDISR YDVKRLCSNS AIIYSDQAKR  420
PPTSSGLG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019625m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005959.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE10.0AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLV4M9T50.0V4M9T5_EUTSA; Uncharacterized protein
STRINGXP_006390645.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]