PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015815m
Common NameEUTSA_v10015815mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 322aa    MW: 38076.5 Da    PI: 6.0846
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015815mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.87.9e-2547130186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     + ++p++++++
  Thhalv10015815m  47 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVTRYKACETTEPEAIR--QGQFPFYNEIQ 130
                      7********************************************************************9744..4469***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006444106IPR001005SANT/Myb domain
CDDcd122032.28E-2246108No hitNo description
PfamPF138373.9E-2047132No hitNo description
PROSITE profilePS500907.88648104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDRRNPFHHH HHHHPLHHLV QQQQLPPPPQ STTVVMDPGG GGERIPQWSI EETKELLGIR  60
EELDQTFMET KRNKLLWEVV AAKMADKGFV RSAEQCKSKW KNLVTRYKAC ETTEPEAIRQ  120
GQFPFYNEIQ SIFTARMQRM LWSGTTEPST SSKRKHQFSS DEEEEEEEDV EEPNQDINEE  180
LLSFVETHKK ESEVITTSTS TNPRKRAKKG KGVACSTKAE TAGSTLKEIL EEFMRQTVKM  240
ENEWRDAWEM KEREREKREK EWRRRMAELE EERAAAERKW MEREEERRLR EEARAQKRDT  300
LIDALLNKLN RDHDDDDHQG F*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015815m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398620.10.0trihelix transcription factor GT-3a
SwissprotQ9SDW01e-149TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLV4LJV60.0V4LJV6_EUTSA; Uncharacterized protein
STRINGXP_006398620.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-131Trihelix family protein