PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007673m
Common NameEUTSA_v10007673mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 437aa    MW: 47768.1 Da    PI: 5.0669
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007673mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-06646337
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        C+ ++e  + lfC+ +   lC +C ++ H        H
  Thhalv10007673m  6 RVPCDFCGERTAVLFCRADTAKLCLSCDQHVHTAnllsrkH 46
                     678*******9******************999444555555 PP
2zf-B_box19.22.6e-064980334
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+++++++++  C++++  lC++C    H
  Thhalv10007673m 49 SQICDNCGNEPVSVQCFTDNLVLCQECDWDVH 80
                     689************************98777 PP
3CCT65.71.3e-22388432145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      R +a++RYkeK+ktR+++K+irYesRKa+A++R RvKGrFvk++e
  Thhalv10007673m 388 RGNAMQRYKEKKKTRRYDKTIRYESRKARADTRLRVKGRFVKASE 432
                      7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.8E-13451IPR000315B-box-type zinc finger
PROSITE profilePS501199.769451IPR000315B-box-type zinc finger
CDDcd000219.48E-9751No hitNo description
CDDcd000211.17E-75180No hitNo description
SMARTSM003361.25294IPR000315B-box-type zinc finger
PfamPF062037.0E-17388430IPR010402CCT domain
PROSITE profilePS5101714.803388430IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGSSERVPCD FCGERTAVLF CRADTAKLCL SCDQHVHTAN LLSRKHVRSQ ICDNCGNEPV  60
SVQCFTDNLV LCQECDWDVH GSCSASDAHV RSAVEGFSGC PSALELAALW GVDLEGRKEE  120
NQVPLTMMDN FGIQLDSWVS GSNVLQELVV PVPKETTFKK RSSSCGRYKL VLCKQLEELL  180
RSGVVGCGDD DGDGDGDCDR DGDCDGEVER GGGEGIMVPE MPERLEWTRD VEESNGEAGG  240
THQPPTTSFT SLLWSAANPS GGQSTQIWDF NLGQSRIPEE TSRAEAAYVT KDAASFTINN  300
FVDLMNDTCS TKPKVVKEIC QGDYNRSTSG QVPATSESNN LPITFGGSEK GSNSSNELHF  360
TEQIAGTSCK STRLVATKAD LERLAQNRGN AMQRYKEKKK TRRYDKTIRY ESRKARADTR  420
LRVKGRFVKA SEASYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007673m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415704.10.0zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLV4KVL40.0V4KVL4_EUTSA; Uncharacterized protein
STRINGXP_006415704.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]