PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10004744m
Common NameEUTSA_v10004744mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family DBB
Protein Properties Length: 281aa    MW: 30007.1 Da    PI: 4.3056
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10004744mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07436436
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + C+ +++  + l+C+ +  +lC +C ++ H  
  Thhalv10004744m  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAA 36
                     68***************************9954 PP
2zf-B_box27.94.7e-094691342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Thhalv10004744m 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                     689*****************************66899999*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.438148IPR000315B-box-type zinc finger
PfamPF006432.1E-5443IPR000315B-box-type zinc finger
CDDcd000215.31E-8548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006432.3E-74691IPR000315B-box-type zinc finger
CDDcd000216.62E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSG ADGSVKHTAV NFLDDCYFSD  120
LDGNASREEE EEEAASWLLP NPKTTAMATA AETVPGDSPE MNTGQQYLFS DPDPYLDLDY  180
GTVDPKLELQ EQNSSGTDGV VPVESRTVRG PTVNENCYEL DFTGGSKGFT YGYNCISHSV  240
SSSSLEVGVV PDGGSVADVS YPYGGAATSE PIREASELFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10004744m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526610.0AK352661.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394745.20.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-165COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLV4MKW20.0V4MKW2_EUTSA; Uncharacterized protein
STRINGXP_006394745.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-165CONSTANS-like 4