PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000258m
Common NameEUTSA_v10000258mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 309aa    MW: 33281.2 Da    PI: 6.9571
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000258mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.19.6e-10446339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      r C+ +++  ++lfC+ +  +lC +C  ++H+       H++
  Thhalv10000258m  4 SRLCDSCKSAAATLFCRADAAFLCGECDGKIHSAnklasrHER 46
                     689*****************************65677777775 PP
2zf-B_box27.37.6e-094792342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Thhalv10000258m 47 VWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPV 92
                     689*****************************66899999*99986 PP
3CCT69.58.3e-24243286144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Thhalv10000258m 243 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 286
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.808249IPR000315B-box-type zinc finger
SMARTSM003362.5E-15249IPR000315B-box-type zinc finger
PfamPF006434.4E-8447IPR000315B-box-type zinc finger
CDDcd000211.41E-9549No hitNo description
PROSITE profilePS5011910.954592IPR000315B-box-type zinc finger
PfamPF006434.7E-74792IPR000315B-box-type zinc finger
CDDcd000213.96E-104892No hitNo description
SMARTSM003361.1E-105092IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658243285IPR010402CCT domain
PfamPF062031.3E-17243285IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSRLCDSC KSAAATLFCR ADAAFLCGEC DGKIHSANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAAALC VTCDRDIHSA NPLSRRHERV PVTPFYDAAP GGGSAKSASS VNFVDEDADV  120
SVEAASWLFP NPSIKYGGGE IPNLFSDLDY SAVDPKMEAS ENSSGNDGVV PVQNKLFLNE  180
DYFNFDISTS KTFTQGPSCI NQTVSSASLD VALVPEGGGM TEISNTTTTT TATPAVQLSP  240
AEREARVLRY REKRKNRKFE KTIRYASRKA YAEMRPRIKG RFAKRTDSRS NDGGDVGIYG  300
GFGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000258m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405043.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-159COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLV4NJM40.0V4NJM4_EUTSA; Uncharacterized protein
STRINGXP_006405043.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-155CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]