PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00234.1.p
Common NameEUGRSUZ_K00234
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83309.4 Da    PI: 6.4365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-2157112156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       r+k ++++++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k
  Eucgr.K00234.1.p  57 RKKYHRHSPHQIQELEAFFKECPHPDEKQRLELSRRLGLESKQIKFWFQNRRTQMK 112
                       7999*************************************************999 PP
2START157.21.3e-492694931206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       e+a + ++el+k+a+ ++ +W +      e +n +e+ + f++  +       +ea+r++ +v+ ++  + e+l+d++ +W et++    + +
  Eucgr.K00234.1.p 269 EVAIASMNELIKMAEPNSCLWLRTLdgakEVLNHEEYSRLFTPLASarhseVVTEASRETSIVPINSLAVIEILMDVN-RWVETFPcivaRSS 360
                       578899*******************99988888999988888766688888899************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t+ev ssg      galq+m ae+q+lsplvp R + f+R+++q+g+g w++vdvSv   q+ +   +++ +++lpSg+++++++ng skvtw
  Eucgr.K00234.1.p 361 TIEVMSSGirgnrnGALQVMHAEFQVLSPLVPlRQVRFLRFCKQHGEGMWAVVDVSVGMLQDSSDPCGSANCRRLPSGCVLQDMPNGCSKVTW 453
                       **************************************************************9988899************************ PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +eh +++g  +h l++s++ sg+ + a++w a lqr+ce+
  Eucgr.K00234.1.p 454 IEHSEYDGTAVHPLYHSFLISGMGFSAQRWIASLQRHCEC 493
                       **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-2046114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-2247116IPR009057Homeodomain-like
PROSITE profilePS5007117.99354114IPR001356Homeobox domain
SMARTSM003891.2E-1956118IPR001356Homeobox domain
PfamPF000466.9E-1957112IPR001356Homeobox domain
CDDcd000866.55E-2057115No hitNo description
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PROSITE profilePS5084840.384260496IPR002913START domain
SuperFamilySSF559611.37E-28263493No hitNo description
CDDcd088758.91E-102264492No hitNo description
SMARTSM002341.2E-33269493IPR002913START domain
PfamPF018521.2E-42269493IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-5326477IPR023393START-like domain
SuperFamilySSF559613.43E-19512751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MEGQSEIDRF GEPFEGSFLG RLKDEGSGSD NQLDGASGDD DQDDAVDEEA GVLPRKRKKY  60
HRHSPHQIQE LEAFFKECPH PDEKQRLELS RRLGLESKQI KFWFQNRRTQ MKTQMERHEN  120
IMLRDDNNRL RNENDAMRSK LANPICGNCG GTAIFNGAGM VSYEEHQLRV ENARLKEEVA  180
RVRALTDKFL GKQPPTALLP SSPSRSNRGP EFSAQGHVPN VSTTATAALP MGISSLDGMS  240
NASPVSPYAR PAVAMGRNQL STEKSAYVEV AIASMNELIK MAEPNSCLWL RTLDGAKEVL  300
NHEEYSRLFT PLASARHSEV VTEASRETSI VPINSLAVIE ILMDVNRWVE TFPCIVARSS  360
TIEVMSSGIR GNRNGALQVM HAEFQVLSPL VPLRQVRFLR FCKQHGEGMW AVVDVSVGML  420
QDSSDPCGSA NCRRLPSGCV LQDMPNGCSK VTWIEHSEYD GTAVHPLYHS FLISGMGFSA  480
QRWIASLQRH CECLLTFMSS TYPNEDGSGM NPSGRRNMLK LAQRMTDNFC SGVCASPLHN  540
WEVLHLGNMN GDVRVTTRKN AGRPGEPPGI VLSAATSIWM PIAHETVFNF VRNEQLRSEW  600
DILSHGGPMQ EIVHVAKGPR RDNCVSLLRA NALSASDTSM VILQETWTDA SGSLIAYAPV  660
DITVIESVMS GGDPNSVALL PSGFALLPDS PSHIDGLKNP DESLIGTADS RGCLMTIGFQ  720
ILVSSTPAAK LTAESVETVH NLLSRTIQRI KTSLQMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00234.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035104.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A058ZYF30.0A0A058ZYF3_EUCGR; Uncharacterized protein
STRINGXP_010035104.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]