PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02222.1.p
Common NameEUGRSUZ_I02222
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 317aa    MW: 35608.4 Da    PI: 6.7347
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.32e-21130190257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+t+t+ ql++Le+ F++ n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Eucgr.I02222.1.p 130 RQRWTPTPLQLQILERIFNEgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 190
                       89*****************99**************************************97 PP
2Wus_type_Homeobox101.27.6e-33129191264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++k
   Eucgr.I02222.1.p 129 ARQRWTPTPLQLQILERIFNEGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRK 191
                        789***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-18125195IPR009057Homeodomain-like
PROSITE profilePS5007115.143126191IPR001356Homeobox domain
SMARTSM003893.1E-14128195IPR001356Homeobox domain
SuperFamilySSF466899.41E-19129194IPR009057Homeodomain-like
CDDcd000861.66E-14130192No hitNo description
PfamPF000463.5E-19130190IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEWEKQEQHH PHHHHHPHHH AHQQQQHHQQ PPQQQQQAKE AQQQQQQQGG EGMGNGTAAG  60
NGGGVLYVKV MTDEQLETLR KQIAVYASIC EQLVEMHKNL TAQQDLAGVR LGNLYCDPLM  120
TTGGHKITAR QRWTPTPLQL QILERIFNEG NGTPSKQKIK EITTELSQHG QISETNVYNW  180
FQNRRARSKR KMQNATGNNT ESEAEAEVES PKEMKTKPEI FQSQQNPVSR NEDLCFQSPE  240
ISSDLHFADS QTKVESMVYP DGSLRSRNRN LGQLSFYDAM MSNSGGLAGN EHLGGKMEVP  300
GAYGLYHSAE DFGMSG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02222.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9640180.0KF964018.1 Eucalyptus grandis isolate EG5 WOX3.1 (WOX13.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029579.10.0PREDICTED: WUSCHEL-related homeobox 8 isoform X1
SwissprotQ5QMM31e-88WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A059ARX50.0A0A059ARX5_EUCGR; Uncharacterized protein
STRINGXP_010029579.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-88WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]