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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00022.1.p | ||||||||
Common Name | EUGRSUZ_I00022, LOC104417993 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 217aa MW: 24295.3 Da PI: 8.6008 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.1 | 1.3e-30 | 55 | 107 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++Y+eC+kNhAa++Gg+a DGCgEfmp geegt +alkC+AC+CHRnFHRre Eucgr.I00022.1.p 55 TKYRECQKNHAAAIGGNARDGCGEFMPG-GEEGTLDALKCSACNCHRNFHRREI 107 68*************************9.999********************96 PP | |||||||
2 | Homeobox | 23.2 | 1.1e-07 | 153 | 208 | 1 | 52 |
TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrR 52 rr Rt+ft++q e + + F+ + +++++++ e+L ++lg++ r+ kvW +N + Eucgr.I00022.1.p 153 RRYRTKFTAQQKEKMLA-FAtkagwRMQKLDEHAVERLCQELGIERRVLKVWMHNNK 208 899***********976.555888789****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-21 | 53 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.1E-28 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 56 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 57 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.47E-20 | 142 | 210 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-29 | 146 | 210 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.762 | 150 | 214 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 2.4E-25 | 152 | 208 | IPR006455 | Homeodomain, ZF-HD class |
Pfam | PF00046 | 2.8E-5 | 153 | 208 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.91E-4 | 153 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSQAGDKPMQ SSRSSSDDVD GQVLPRSPPP YIQLREDHDR KREPSLHGGE GSGVTKYREC 60 QKNHAAAIGG NARDGCGEFM PGGEEGTLDA LKCSACNCHR NFHRREILAV HPLNVDASGG 120 LTLHLLKLDP TDSPTDNDGD ETPKVEVVEK KKRRYRTKFT AQQKEKMLAF ATKAGWRMQK 180 LDEHAVERLC QELGIERRVL KVWMHNNKHN YLPSNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 153 | 210 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 153 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00022.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027493.1 | 1e-163 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q2QW44 | 2e-50 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A059AK37 | 1e-161 | A0A059AK37_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027493.1 | 1e-162 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-46 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00022.1.p |
Entrez Gene | 104417993 |