PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01254.1.p
Common NameEUGRSUZ_H01254
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 184aa    MW: 20705.3 Da    PI: 5.946
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01254.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-2059112356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        ++++t+eq+e Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Eucgr.H01254.1.p  59 GKRKLTAEQVELLEQNFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 112
                       56799************************************************9 PP
2HD-ZIP_I/II118.92.8e-3860150393
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       kr+l++eqv+lLE++F  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ e++r+e+ev +L+e+l+e
  Eucgr.H01254.1.p  60 KRKLTAEQVELLEQNFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEVEYAKLKSVHETVVVEKCRFESEVLKLKEQLSE 150
                       9***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-1851115IPR009057Homeodomain-like
PROSITE profilePS5007117.31354114IPR001356Homeobox domain
SMARTSM003892.5E-1957118IPR001356Homeobox domain
PfamPF000465.9E-1859112IPR001356Homeobox domain
CDDcd000862.72E-1660115No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2161120IPR009057Homeodomain-like
PRINTSPR000317.3E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000317.3E-694110IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNDLSEDDMA LISELYPGVY MRPSPPPQEA KPPRRRRKKS RGLENPGEEG GGTGGEGRGK  60
RKLTAEQVEL LEQNFGDEHK LESERKDRLA AELGLDPRQV AVWFQNRRAR WKSKKLEVEY  120
AKLKSVHETV VVEKCRFESE VLKLKEQLSE AEMEIKRLSE KADLGLSGNS PCSSVTADAA  180
TDDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01254.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070037.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU703e-63ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A059AXW81e-130A0A059AXW8_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010070037.11e-130(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-54homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]