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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H01192.1.p | ||||||||
Common Name | EUGRSUZ_H01192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HB-other | ||||||||
Protein Properties | Length: 182aa MW: 20163.4 Da PI: 10.5241 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.2 | 4.8e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R + +k Eucgr.H01192.1.p 69 KRPRDLLNPKAVKYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFNSQRSRVRK 125 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.734 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0027 | 68 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.98E-7 | 68 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.44E-5 | 69 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-6 | 69 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEVLGEDLSE QEIGSSPESL RQLLESQHAL FRGQIDRLQS IVVAQCRLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFNSQR 120 SRVRKFVRLS REKAIRLKAP KDSNVFPPVN SESATSTPVD LLPLNSIAPR CWRCLTLPCA 180 K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H01192.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM450469 | 4e-35 | AM450469.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X023104.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069972.2 | 1e-109 | PREDICTED: LOW QUALITY PROTEIN: homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-62 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A059AYM1 | 1e-128 | A0A059AYM1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069972.1 | 1e-111 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 6e-65 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H01192.1.p |
Publications ? help Back to Top | |||
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