PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02322.1.p
Common NameEUGRSUZ_G02322, LOC104453797
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 464aa    MW: 51186 Da    PI: 5.7021
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02322.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.62.9e-092164340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      +r C+++ + +++++C  ++ +lC++C  + H+       H++v
  Eucgr.G02322.1.p 21 ARACDNCIQRRARWYCAADDAFLCQSCDRSVHSAnplarrHERV 64
                      578*****************************657888888876 PP
2CCT68.61.6e-23405448144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Eucgr.G02322.1.p 405 REAKVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 448
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.3E-111966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9931966IPR000315B-box-type zinc finger
PfamPF006439.0E-82164IPR000315B-box-type zinc finger
CDDcd000212.49E-102266No hitNo description
PfamPF062035.8E-18405447IPR010402CCT domain
PROSITE profilePS5101716.053405447IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSPAVMIPHK NAANAFSGKT ARACDNCIQR RARWYCAADD AFLCQSCDRS VHSANPLARR  60
HERVRLKTAA TPQKHLGEFS SHHRKKPSSW HRGFTKKPRT PRGAKSALHR ATKPENAARN  120
PFPVVPEVGG DETSNEESEE HLLYRVPAYD PFVAEMCTSK GAEATAFSAE PETVAAFDGS  180
GDGDNRSKGL TDEVENLQEF LPSDADLAEF AADVESLLGR ALDTESFGIE GLGFVDCKER  240
DDNSMDCSLG SGGAIKVEEK EGVAEVVVEL GHDDMEMDVS KETFELNFDY DSPTTCGDEE  300
EEAKVIVELE GEKNVENCGA DEGTNISSEE RKKKKKREIF LRLDYEAVIS AWAGQGSPWT  360
TGERPDFSPD NCWPDFMGMS GLEFQNLYGE AGVHGGHVGM GDAGREAKVS RYREKRRTRL  420
FSKKIRYEVR KLNAEKRPRM KGRFVKRASS ASSSAPAFPL LNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335ERKKKKK
2330336RKKKKKR
3330337RKKKKKRE
4415431RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02322.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066724.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A059BFB10.0A0A059BFB1_EUCGR; Uncharacterized protein
STRINGXP_010066724.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-99B-box type zinc finger protein with CCT domain