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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G02068.1.p | ||||||||
Common Name | EUGRSUZ_G02068 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 173aa MW: 19774.3 Da PI: 7.8895 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 76 | 5.4e-24 | 2 | 53 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++v Y+eCl+NhAa+lG + vDGC E+ p+ +a l CaACgCHRn+HR+ + Eucgr.G02068.1.p 2 QRVAYNECLHNHAANLGRYMVDGCHEYSPK----IISADLLCAACGCHRNYHRKVT 53 6899*************************9....45789**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.7E-20 | 4 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.634 | 6 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-10 | 6 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-17 | 6 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 105 | 171 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.54E-10 | 106 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.2E-18 | 111 | 169 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQRVAYNECL HNHAANLGRY MVDGCHEYSP KIISADLLCA ACGCHRNYHR KVTIFDPDNT 60 EASGNHSPGD HNLITPKEES FDHEAVPPMI GTGGEDERLN QLVDPAQHEK KKRPKSRFTK 120 EQVEQMRAFA ENLGWSTRDR SRVPEIMVFC ASMGITKVVF TTWLYNNKKH YGR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G02068.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010068685.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 10 | ||||
TrEMBL | A0A059BFM2 | 1e-130 | A0A059BFM2_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010068685.1 | 1e-131 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 2e-31 | homeobox protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G02068.1.p |