PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00400.1.p
Common NameEUGRSUZ_E00400, LOC104443662
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35158.3 Da    PI: 8.295
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.21.6e-14150210256
                       T--SS--HHHHHHHHHHHHHSSS--......HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknryps......aeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q  +Lee F+++++++      ++++  LAk+lgL  rqV vWFqNrRa+ k
  Eucgr.E00400.1.p 150 RKKLRLSKDQSAVLEESFKEHNTLNpwvrfmQKQKLALAKQLGLRPRQVEVWFQNRRARTK 210
                       788899**************999983333335778899*********************98 PP
2HD-ZIP_I/II118.63.3e-38150245191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep......erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                       +kk+rlsk+q+++LEesF+e+++L+p      ++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eL
  Eucgr.E00400.1.p 150 RKKLRLSKDQSAVLEESFKEHNTLNPwvrfmqKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVQEL 242
                       69***********************87777668999********************************************************* PP

       HD-ZIP_I/II  88 reel 91 
                       r +l
  Eucgr.E00400.1.p 243 R-AL 245
                       9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.4E-311119IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.0E-15135206IPR009057Homeodomain-like
SuperFamilySSF466894.6E-15139213IPR009057Homeodomain-like
PROSITE profilePS5007115.03146212IPR001356Homeobox domain
SMARTSM003893.7E-11148216IPR001356Homeobox domain
CDDcd000866.14E-14150213No hitNo description
PfamPF000465.5E-12150210IPR001356Homeobox domain
PRINTSPR000312.3E-5183192IPR000047Helix-turn-helix motif
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5192208IPR000047Helix-turn-helix motif
SMARTSM003402.2E-27212255IPR003106Leucine zipper, homeobox-associated
PfamPF021831.9E-11212246IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGERDDLGLS LSLSFPQGHL HQQQQQQQRQ SLQLNLMPSL VPSSASSAQS GFNLQKRSCN  60
DAFPSSSDRN SEARSFLRGI DVNREPSAGA AADYGEDEAG VSSPNSTAST VSGKRSERDH  120
QSQTNGDDLD NERASSRGGG SDEEDGDMSR KKLRLSKDQS AVLEESFKEH NTLNPWVRFM  180
QKQKLALAKQ LGLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCESLTE ENRRLQKEVQ  240
ELRALKLSPQ FYMHLSPPTT LTMCPSCERV AAPSPPSAVG RPLAAVPAHP RPVPLINPWA  300
PAAAPLAHAP FDALRSCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154SRKKLRL
2204212RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749807e-81EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283627e-81KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055468.10.0PREDICTED: homeobox-leucine zipper protein HAT4 isoform X1
SwissprotQ054661e-104HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A059C0R90.0A0A059C0R9_EUCGR; Uncharacterized protein
STRINGXP_010055468.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-75homeobox protein 2
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Müller-Moulé P, et al.
    YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
    PeerJ, 2016. 4: p. e2574
    [PMID:27761349]
  5. Ivarson E, et al.
    Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
    Front Plant Sci, 2016. 7: p. 2032
    [PMID:28119714]
  6. Kasulin L, et al.
    A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
    Mol. Ecol., 2017. 26(13): p. 3389-3404
    [PMID:28316114]
  7. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]