PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01811.1.p
Common NameEUGRSUZ_D01811
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 285aa    MW: 31760.1 Da    PI: 5.6277
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01811.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31112170259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k vers++dp+v+++tY+geHnh+
  Eucgr.D01811.1.p 112 SDMWAWRKYGQKPIKGSPHPRSYYRCSSSkGCLARKLVERSSSDPRVFVVTYTGEHNHT 170
                       79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-3197172IPR003657WRKY domain
PROSITE profilePS5081133.637106172IPR003657WRKY domain
SuperFamilySSF1182901.7E-26109172IPR003657WRKY domain
SMARTSM007741.6E-37111171IPR003657WRKY domain
PfamPF031063.5E-26113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDWMSWQSDA DLRQEEILFG GFSDFAETSA LLDDLEQLYK PFYPEPEAVR DAGLISEEVI  60
EEAENKLKEE EPLTDASTTS QVVHYEETKQ RRRKNQQKRE VHHVTAADGV SSDMWAWRKY  120
GQKPIKGSPH PRSYYRCSSS KGCLARKLVE RSSSDPRVFV VTYTGEHNHT HPTRRNALAG  180
STRNKFASPK AKQPAIAKGN RHAPLANGPC DSPSSTATRS PVTPPPVVTH SEEDKRQLSS  240
NESGLSSGSD ENNTVPTMFF SDEMFMGFEE LNDMVMDPGV AGYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1899172274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01811.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053209.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A059CGI40.0A0A059CGI4_EUCGR; Uncharacterized protein
STRINGXP_010053209.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-41WRKY DNA-binding protein 27