PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D00184.5.p
Common NameEUGRSUZ_D00184
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 771aa    MW: 84551.4 Da    PI: 7.1392
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D00184.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598.1e-191876357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Eucgr.D00184.5.p 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76
                      6789*****************************************************97 PP
2START172.13.7e-541673742204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +a e+++++++ka+ ++  Wv++  +++g++++ +++ s++++g a+r++g+v  +++  v+e+l+d++ W ++++  e+l+vi  g  g+++
  Eucgr.D00184.5.p 167 IAAETLTQFLAKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARVCGLVSLEPM-KVAEILKDRPSWFRDCRCLEVLNVIPAGngGTIE 258
                       578999****************************************************.8888888888*****************999**** PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++++a+++l++ Rdf++vRy+ +l++g++vi+++S++  +  p+   sss+vRae+lpSg+li+p+++g+  +++v+hvdl++++++++l
  Eucgr.D00184.5.p 259 LVYMQTYAPTTLAAaRDFWTVRYTTTLEDGSLVICERSLTTSTGGPSgpsSSSFVRAEVLPSGYLIRPCEGGGAIIHIVDHVDLDAWSVPEVL 351
                       *******************************************9999999******************************************* PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++k++va+l++ +
  Eucgr.D00184.5.p 352 RPLYESSKILAQKMTVAALRHIR 374
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6611377IPR001356Homeobox domain
SMARTSM003896.0E-151581IPR001356Homeobox domain
PfamPF000462.1E-161876IPR001356Homeobox domain
SuperFamilySSF466892.01E-161880IPR009057Homeodomain-like
CDDcd000866.98E-171878No hitNo description
Gene3DG3DSA:1.10.10.608.5E-192076IPR009057Homeodomain-like
CDDcd146867.34E-570109No hitNo description
PROSITE profilePS5084825.339157385IPR002913START domain
Gene3DG3DSA:3.30.530.205.3E-22166371IPR023393START-like domain
SMARTSM002349.2E-49166376IPR002913START domain
SuperFamilySSF559615.63E-37167378No hitNo description
PfamPF018521.2E-51167374IPR002913START domain
PfamPF086705.4E-9701748IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MALAMHRECS SKQMDASKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKEA YRLQTVNRKL NAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ  120
QLHSASTATT DNSCESVVMS GQHQQQHNPT PQHPEKDASS PAGLLAIAAE TLTQFLAKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCNG VAARVCGLVS LEPMKVAEIL KDRPSWFRDC  240
RCLEVLNVIP AGNGGTIELV YMQTYAPTTL AAARDFWTVR YTTTLEDGSL VICERSLTTS  300
TGGPSGPSSS SFVRAEVLPS GYLIRPCEGG GAIIHIVDHV DLDAWSVPEV LRPLYESSKI  360
LAQKMTVAAL RHIRQIAQES SGEIQYGGSR QPAVLRTFSQ KLCRGFNDAV NGFVDDGWSV  420
LSSDGVEDVT IAVNSSPNKF LGSQYNATIF PNFGRGVLCA KASMLLQNVP PAVLVRFLRE  480
HRSEWADHGI DAYSAASLKT SSYAIPCVRP GGFPSSHVIL PLAHTVEQEE FLEVVRLEGH  540
AFSPEDIPLA HDMYLLQLCS GVDENAVGAC AQLVFAPIDE SFADDAPLLP SGFRVIQLDP  600
KTDGPAPTRT LDLASTLEVG SGGARPTCEA DASTYNLRSV LTIAFQFVFE NHLRDTVAIM  660
ARQYVRSVVG SVQRVAMAIA PSRLGGHLGP KSLSGSPEAL TLARWICRSY RICAGAELLR  720
GDSQAGDAVL KEFWHHSDAI MCCSVNTNVV HSHSFLFNYI HLSTKLRLSN *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D00184.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051960.10.0PREDICTED: homeobox-leucine zipper protein HOX32 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A059CBP70.0A0A059CBP7_EUCGR; Uncharacterized protein
STRINGXP_010051959.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]