PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C01876.1.p
Common NameEUGRSUZ_C01876, LOC104437096
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 347aa    MW: 37193.5 Da    PI: 6.1323
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C01876.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.13.6e-08443437
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      + C+ +++  + lfC+ ++ +lC++C  + H        H
  Eucgr.C01876.1.p  4 KLCDSCKSATAALFCRADSAFLCPSCDAKVHAAnklasrH 43
                      58**************************999544455555 PP
2zf-B_box22.72e-074791442
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       +C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Eucgr.C01876.1.p 47 VVCEVCEQSPAYVTCRADAASLCISCDRDIHSAnpvaqkHDRVPV 91
                      68*****************************66999999999986 PP
3CCT70.25.1e-24285328144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Eucgr.C01876.1.p 285 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRA 328
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.651148IPR000315B-box-type zinc finger
SMARTSM003366.1E-12148IPR000315B-box-type zinc finger
PfamPF006433.1E-6444IPR000315B-box-type zinc finger
CDDcd000218.02E-8546No hitNo description
PROSITE profilePS5011910.9214491IPR000315B-box-type zinc finger
PfamPF006439.9E-64791IPR000315B-box-type zinc finger
CDDcd000211.84E-74791No hitNo description
SMARTSM003361.3E-74991IPR000315B-box-type zinc finger
PfamPF062036.5E-18285327IPR010402CCT domain
PROSITE profilePS5101716.787285327IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASKLCDSCK SATAALFCRA DSAFLCPSCD AKVHAANKLA SRHARVVVCE VCEQSPAYVT  60
CRADAASLCI SCDRDIHSAN PVAQKHDRVP VVPFYDSLPP NHHHHPAVAP PFAKPPAAGD  120
FVLKSEDDVS REEEEEAASW LLPNPSKAAE SPDVNSAHQF LFGDDDVDPY LDVDYGPVDP  180
KFEPSGDQNS SGTADGVVPV RSEGVVHGPF VGEGGFDLEL TGGSKGYGYS YGAPCLSHSV  240
SSSSLDVGVV PDGSTVTDIS NPGGRAVGVG FESLSRALQL SSVDREARVL RYREKRKNRK  300
FEKTIRYASR KAYAETRPRI KGRFAKRADI EAEAERMFGF GVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C01876.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010048286.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-120COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A059CQ860.0A0A059CQ86_EUCGR; Uncharacterized protein
STRINGXP_010048286.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.13e-95CONSTANS-like 4