PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03543.1.p
Common NameEUGRSUZ_B03543, LOC104433716
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CO-like
Protein Properties Length: 503aa    MW: 53648.6 Da    PI: 7.4415
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03543.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-061748536
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                       C+ + + ++ l+C+++   lC  C  + H+ 
  Eucgr.B03543.1.p 17 PCDFCTDRPAVLYCRSDAAKLCLLCDRHVHSA 48
                      7**************************99954 PP
2zf-B_box16.51.7e-055890335
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                       ++C++++  +++  C +++  lC+dC    H 
  Eucgr.B03543.1.p 58 SQICDNCGAAPASDRCSTDKLDLCQDCDWDAHA 90
                      579************************988885 PP
3CCT64.43.3e-22456500145
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                       R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++e
  Eucgr.B03543.1.p 456 RGNAMLRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKASE 500
                       7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-111360IPR000315B-box-type zinc finger
PROSITE profilePS501199.3431360IPR000315B-box-type zinc finger
CDDcd000212.81E-81648No hitNo description
PfamPF006432.1E-51755IPR000315B-box-type zinc finger
CDDcd000215.87E-760103No hitNo description
SMARTSM003360.5161103IPR000315B-box-type zinc finger
PROSITE profilePS5101714.862456498IPR010402CCT domain
PfamPF062033.6E-16456498IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MASPGSRTPA GERAVVPCDF CTDRPAVLYC RSDAAKLCLL CDRHVHSANL LSRKHLRSQI  60
CDNCGAAPAS DRCSTDKLDL CQDCDWDAHA ASPVASSHHR ARIDGFSGCP SPLDLASLWG  120
LDLADGGKKS SAIARNDGGQ LMQEVISSME GWAYGAGANG FGFQDLMVPN DAGLAAPYPG  180
AVKQGSTAGR TSCGRRKQEM HRQLVELLNG DFEDNSDGGG GAGGGGSGEG GDNLVPRTPN  240
RTAAAWPENG EGICGEQRHG SDGVDAVVVD HHQPFQQQPT FTSLLMFPTQ RDLEESGRGV  300
VGAGTSNVGG QSTQIWDFNL GRLRSQEEAS AVEVGYGQNS EGFMIKSYNE LMKDTSITTT  360
KMLGDVYQLN GYVMPKDISS YNASSSNLAA SQGPATSESN NLPVSGPSSG SALAKAKGST  420
DSKGYNFVDQ TLITYGNDMK TMVKTKADLE LLAQNRGNAM LRYKEKKKNR RYDKHIRYES  480
RKARADTRKR VKGRFVKASE AP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03543.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044864.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A059D9W50.0A0A059D9W5_EUCGR; Uncharacterized protein
STRINGXP_010044864.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.17e-91B-box type zinc finger protein with CCT domain