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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.A00520.1.p | ||||||||
Common Name | EUGRSUZ_A00520, LOC104421188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 34753.8 Da PI: 8.8014 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.5 | 1.1e-25 | 47 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r ++++r+ ++k++k+lWe +s mr++gf+rs++qCk+kw+nl +ryk ++++e + ++++py+++++ Eucgr.A00520.1.p 47 QWSVQETKEFLMIRADLDRRFMETKRNKQLWEVISTGMRDKGFNRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPYYNEMQ 129 7********************************************************************95...56689******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0022 | 44 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.17E-22 | 46 | 111 | No hit | No description |
Pfam | PF13837 | 7.0E-21 | 47 | 131 | No hit | No description |
PROSITE profile | PS50090 | 7.097 | 48 | 104 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEGQFSHHHH HHQHLLQQQQ QLRPQPLPQQ QQQQSVSIET GSDRFPQWSV QETKEFLMIR 60 ADLDRRFMET KRNKQLWEVI STGMRDKGFN RSAEQCKCKW KNLVTRYKGC ETMEPEAMRQ 120 QFPYYNEMQA IFEARMQRML WAETEGGGGA GSTSKSKKAS SSQLSSEDDG DDEDSEGEKG 180 KKKKKAKGNA GTSNSSGGSS SEVRKILEEF MKQQVRMEAD WREAYEAREN ERRVKEMEWR 240 QTMESLENER IMMDRRWRER EEQRRMREEA RAEKRDALIT ALLNKLRRED HNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ebi_A | 3e-12 | 48 | 127 | 7 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.A00520.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031401.1 | 0.0 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 2e-72 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A059DC17 | 0.0 | A0A059DC17_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031401.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 4e-51 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.A00520.1.p |
Entrez Gene | 104421188 |
Publications ? help Back to Top | |||
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