PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC038364.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 270aa MW: 29747.9 Da PI: 9.9634

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC038364.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.3	1.5e-32	3	80	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++elvg+kktLvfykgrap+gek++Wvmheyr+ EcC038364.10 3 KMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 80 56889***********************************9989999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.084	1	101	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-38	3	101	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	8	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSVTSE LVGMKKTLVF 60 YKGRAPRGEK SNWVMHEYRI HSKSAFRTAK DEWVVCRVFQ KSAGAKKYPS SQSRAVPPYN 120 LEIGSSVVPP TMMPPENFQF LGRNYMNGAD LAEINRVLRS GAMSVNQPMP PQLNPTGTTG 180 GCFTISGLNL NLGGATSQPV LRPVMQAPPG PAMSHQDMVV GSTMMSSSTA LVGDQAGGYG 240 GEMGHANVGG NRYLGMENCM EMDNYWPPAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-35	1	107	65	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-35	1	107	65	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-35	1	107	65	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-35	1	107	65	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-35	1	107	68	174	NAC domain-containing protein 19
3swm_B	5e-35	1	107	68	174	NAC domain-containing protein 19
3swm_C	5e-35	1	107	68	174	NAC domain-containing protein 19
3swm_D	5e-35	1	107	68	174	NAC domain-containing protein 19
3swp_A	5e-35	1	107	68	174	NAC domain-containing protein 19
3swp_B	5e-35	1	107	68	174	NAC domain-containing protein 19
3swp_C	5e-35	1	107	68	174	NAC domain-containing protein 19
3swp_D	5e-35	1	107	68	174	NAC domain-containing protein 19
4dul_A	4e-35	1	107	65	171	NAC domain-containing protein 19
4dul_B	4e-35	1	107	65	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048462.1	0.0	PREDICTED: NAC domain-containing protein 92
Refseq	XP_010048463.1	0.0	PREDICTED: NAC domain-containing protein 92
Refseq	XP_010048464.1	0.0	PREDICTED: NAC domain-containing protein 92
TrEMBL	A0A059CQF7	0.0	A0A059CQF7_EUCGR; Uncharacterized protein
STRING	XP_010048462.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-78	NAC domain containing protein 38