PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC036859.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 134aa MW: 15654.9 Da PI: 8.2246

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC036859.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	119.2	5.3e-37	1	63	8	70
DUF702 8 CqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70 CqdCGnqakkdC+h RCRtCCksrgf+C thvkstWvpaakrrerqq+la+a+ +++++++ EcC036859.10 1 CQDCGNQAKKDCVHLRCRTCCKSRGFECPTHVKSTWVPAAKRRERQQHLATAAVMHQQQQQQP 63 ************************************************999876665554332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	9.6E-28	1	42	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.8E-35	1	81	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
CQDCGNQAKK DCVHLRCRTC CKSRGFECPT HVKSTWVPAA KRRERQQHLA TAAVMHQQQQ 60 QQPLRQEQPF HLDHYFKRQR DGEVAAAPPF PIATSGNSIG FERETEILWD FFPIARALDF 120 FLFYILRFET ICDL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061013.1	1e-54	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	3e-28	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059BQA6	4e-54	A0A059BQA6_EUCGR; Uncharacterized protein
STRING	XP_010061013.1	4e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22621	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-29	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]