PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC034568.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 349aa MW: 36536.9 Da PI: 7.604

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC034568.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.3	4.2e-64	126	269	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 g++sCqdCGnqakkdC h RCRtCCksrgfdC+thvkstWvpaakrrerqqqlaa+++++ ++++ + ++s+ ++ +++s+ EcC034568.10 126 RGGISCQDCGNQAKKDCPHLRCRTCCKSRGFDCSTHVKSTWVPAAKRRERQQQLAALKEHHHQEQRL--------QLRGEASKRQRDDRGRHNSSGL 214 5789**************************************************97666444322........2222222223333333444444 PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++P+evss+avfrcv+vssvdd +e++aYqtav+igGhvf+GiLyd+G+++ EcC034568.10 215 ELVGNFPAEVSSPAVFRCVKVSSVDDPDEQFAYQTAVNIGGHVFRGILYDHGPDH 269 55677**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-65	128	268	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.2E-27	130	172	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.5E-26	220	267	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
ARSAAGAGGG GGGGGDQQIN HPQATATAEI PWFYYPRGNV DDVGTSSTYK GLELWHQNQP 60 QTQQQLHFFS QQQQDLYASA AGLGVGPSGG GGSGRGSINV FSDESSRSGG GFTTSTSAAT 120 TGGGMRGGIS CQDCGNQAKK DCPHLRCRTC CKSRGFDCST HVKSTWVPAA KRRERQQQLA 180 ALKEHHHQEQ RLQLRGEASK RQRDDRGRHN SSGLELVGNF PAEVSSPAVF RCVKVSSVDD 240 PDEQFAYQTA VNIGGHVFRG ILYDHGPDHP SYTNVAAGDS SSGGGGGGGL VQPLDLIAAA 300 ATAAASPITN AESAHVSSAT APFFDSASLY PPPLSTYMAG TQFFPHPRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

ARSAAGAGGG GGGGGDQQIN HPQATATAEI PWFYYPRGNV DDVGTSSTYK GLELWHQNQP  60
QTQQQLHFFS QQQQDLYASA AGLGVGPSGG GGSGRGSINV FSDESSRSGG GFTTSTSAAT  120
TGGGMRGGIS CQDCGNQAKK DCPHLRCRTC CKSRGFDCST HVKSTWVPAA KRRERQQQLA  180
ALKEHHHQEQ RLQLRGEASK RQRDDRGRHN SSGLELVGNF PAEVSSPAVF RCVKVSSVDD  240
PDEQFAYQTA VNIGGHVFRG ILYDHGPDHP SYTNVAAGDS SSGGGGGGGL VQPLDLIAAA  300
ATAAASPITN AESAHVSSAT APFFDSASLY PPPLSTYMAG TQFFPHPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029724.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	1e-82	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059ART0	0.0	A0A059ART0_EUCGR; Uncharacterized protein
STRING	XP_010029724.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	9e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]