PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0228s00017.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family HSF
Protein Properties Length: 570aa    MW: 61625.9 Da    PI: 6.3656
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0228s00017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.4e-33251162102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d+++++++sw +++ sfvv+++ efa ++Lpk+Fkh+n++SFvRQLn+YgF+kv+ ++         weF++++F +g+
  Dusal.0228s00017.1.p  25 FLTKTYELVDDPSTDSVVSWGSDNASFVVWKPPEFAWDLLPKHFKHNNLSSFVRQLNTYGFRKVNPDS---------WEFANDHFIRGR 104
                           9****************************************************************998.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll+ i+r+k 
  Dusal.0228s00017.1.p 105 RDLLRXIHRRKP 116
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3321114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MTNRHNGHYY QDGQSGVAGG GVPPFLTKTY ELVDDPSTDS VVSWGSDNAS FVVWKPPEFA  60
WDLLPKHFKH NNLSSFVRQL NTYGFRKVNP DSWEFANDHF IRGRRDLLRX IHRRKPASTG  120
GAHAGSIPPP TMMPPGQTAI ELGAYGGFQQ DIDSLKRDKN MLMMELVRLR QNQAASDNLV  180
QSLHERLAAT EQRQQVLINF FASALKDPRI LHRLLSTMSP PSSMHRIMPG PGRKKRRARG  240
NDSDGPLSEM GMDMQMDPGS PELDPVTGMP PSIQEDTGHR SSESEGISSN NEHKHQQLVQ  300
YNPSSQFNSN SGDSANSWLQ QMGDMLAASL PPPASGPPAG GPDSAFCMPR QQSLALPSVP  360
SLPPPPPLPP VDLQQPPLEG QDFSSAFGGL QLEGFMPQGN MANGCNGQML IPSTSATMGP  420
PTAHHHSSQN GIPDMNSLQG GSSTSDPLPT QQGMRPLSKS NTINSSMPNL PPMGTPSNLP  480
PIGGGSGGKG MTGPSPPSSR PPIPPMGPTD SMDLGNIINL GHMNSGELLL MDDSFRDELW  540
SMFNTQPQQE GQPPMTEDVL QQLQNSLRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-231611419129Heat shock factor protein 1
5d5v_B4e-231611419129Heat shock factor protein 1
5d5v_D4e-231611419129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238RKKRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-69heat shock transcription factor A1D