PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do015652.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 351aa    MW: 38468.7 Da    PI: 6.5049
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do015652.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ +  +G g+W+++++  g+ R++k+c++rw +yl
       Do015652.1 14 RGLWSPEEDEKLYNHIIHYGVGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding40.56.4e-1367140146
                      TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l++ ++k lG+                              +W+ Ia+ ++ gRt++++k++w++
       Do015652.1  67 RGSFSQQEEDLIISLHKILGNShsngnnlalsfwkqshsfvalpftktnviRWSQIASQLP-GRTDNEIKNFWNS 140
                      899*****************99***************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.005965IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-22964IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
SuperFamilySSF466893.63E-221465IPR009057Homeodomain-like
PfamPF002495.5E-141461IPR001005SANT/Myb domain
CDDcd001672.24E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2165146IPR009057Homeodomain-like
SMARTSM007171.9E-1266144IPR001005SANT/Myb domain
PROSITE profilePS512948.8866146IPR017930Myb domain
PfamPF002491.6E-1067140IPR001005SANT/Myb domain
CDDcd001674.91E-769139No hitNo description
SuperFamilySSF466893.63E-22114143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGREAAATRP KLRRGLWSPE EDEKLYNHII HYGVGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGSF SQQEEDLIIS LHKILGNSHS NGNNLALSFW KQSHSFVALP FTKTNVIRWS  120
QIASQLPGRT DNEIKNFWNS CIKKKLRQRG IDPATHKPLD DDDAAAANNA EAPRDDRKQP  180
PAATDHHCFA MGGASSDPLA PQSPTASFDP LSVTNVPAMQ GSSYGAAHSF RSDNLCDYGG  240
VDVASDAATY SAYTGGGDSS SNSNGTWTCG NVVGGEPMPP HMDMFGRDAE AYQFDPAKYS  300
PWQQHEAAAR LHDSVSGAAS FPIRSMSRDL PDSCFDLARS ALEDEFSVDF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24101463108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo015652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794211e-113HF679421.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB15 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968898.10.0myb-related protein Hv33
RefseqXP_004968899.10.0myb-related protein Hv33
SwissprotP200279e-73MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A1E5VSI90.0A0A1E5VSI9_9POAL; Myb-related protein Hv33
STRINGSi002220m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111643041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-68myb domain protein 86