PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011035.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 651aa    MW: 68359.4 Da    PI: 6.0396
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011035.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix99.82.3e-31468552186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+ev aLi++r+ +e r+++  lk+plWeevs +m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Do011035.1 468 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSTRMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 552
                 8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.306461525IPR017877Myb-like domain
CDDcd122031.18E-29467532No hitNo description
PfamPF138378.3E-23467554No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMTAPPPQQQ QPPQPAAAQE LGGPFRYQPL HHHALPPQHH  60
HHAPHMPPHY AHFGAAPPAP FTQQLLHQAA AAGHHLQLFQ EQHHHHHKPQ APPPQQQQHH  120
QAQQPARWAP QHHQQQHHQP QHHHHHHHHL GFDVEAAVPE SSGAGAGSAA SGAAAPPGVP  180
SFLAAAMNFK LAVDAGGGSG ATGGTDDALN DGGGGAGSGM MLHVGGGEDD EAATESRLRR  240
WTGDEETSIK EPTWRPLDID YLHSTSSSKR APGKEKVATP ESPAPAAAAA NYFKKGDDNA  300
AAAAAAAAAS AGGGNYKLFS ELEAIYKPGS SGAGGPQTGS GSGLTGDDNA ILEPAMADLP  360
GVAAADAPQL NTSETSAGEE AAAVVQPPQT HPQPAADAAR RKRKRRRQEQ LSASASFFER  420
LSIALPPAAA ASGDDMSQDA AAGLGKELVP YDGGDPISGG SLHLSTSRWP KHEVEALIRV  480
RTGLEGRFQE PGLKGPLWEE VSTRMAAAGY GRSAKRCKEK WENINKYFRK AKESGKKRPA  540
HAKTCPYFDE LDRLYSRTSS NNGEAGDEAK ASSELLDAVV KYPEAAHGGP PGFMLDREHQ  600
NEASGGGGND GGAEDGNDEE GDGEEEDGIG KGRGGDDQDD EVESHGHGDD E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399404RRKRKR
2400405RKRKRR
3400406RKRKRRR
4401406KRKRRR
5402406RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407371e-123BT040737.1 Zea mays full-length cDNA clone ZM_BFc0121H15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A368PHC90.0A0A368PHC9_SETIT; Uncharacterized protein
STRINGLPERR02G00380.11e-150(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-38Trihelix family protein