PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45785.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 395aa    MW: 43879 Da    PI: 6.7335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45785.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19187237256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  KZV45785.1 187 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 237
                 59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-33186245No hitNo description
Gene3DG3DSA:3.30.730.104.8E-32187245IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23187245IPR016177DNA-binding domain
PROSITE profilePS5103223.024187244IPR001471AP2/ERF domain
SMARTSM003801.6E-37187250IPR001471AP2/ERF domain
PfamPF008472.2E-12188237IPR001471AP2/ERF domain
PRINTSPR003676.4E-11188199IPR001471AP2/ERF domain
PRINTSPR003676.4E-11210226IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSTKGKGKS KKSDEESVRR DKGKEFERKP VSDEASMSNR PRKKASQNVP SSSSSSASSS  60
STQPVPQPVL SIAPLTIPIQ PPNSRLIFPF AFDHSPPSPF LPPPAQQSLL QQQHQMISFA  120
PQSDHQLQSF SFPPYFIGDA QQQLLQYWSG ALNLSPRNRM MMMMNRLGRD GTTVFRPPMA  180
PLTTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EDAAMAYDRE AFKLRGENAK  240
LNFPERFIGR ENESVAAEAS TYGEGTAVGA LSQPQPVQEP RQADQAADIS RFGLIGSELA  300
QENVENLAGD GDISPSSELV WGDMNEAWFN AASAGYVPMS PAWDDHLLMP PNLPFESIHH  360
NESSQNVDSQ SIQESKASSS SSSCPMKPFS WKDHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20186246162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071708.11e-108ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2Z7CGE90.0A0A2Z7CGE9_9LAMI; Uncharacterized protein
STRINGEOX993825e-95(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.14e-46ERF family protein