PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40732.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Nin-like

Protein Properties

Length: 985aa MW: 107783 Da PI: 5.8899

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40732.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.5	3.2e-29	583	634	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ KZV40732.1 583 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 634 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.393	573	654	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-26	586	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-23	889	974	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.5E-28	890	972	No hit	No description
Pfam	PF00564	7.9E-19	890	971	IPR000270	PB1 domain
SMART	SM00666	1.5E-25	890	972	IPR000270	PB1 domain
PROSITE profile	PS51745	26.429	890	972	IPR000270	PB1 domain
CDD	cd06407	1.32E-36	891	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MKISEEPKQE SNPVPVQPPC AGSDGLMDLD FDLDGAWPLD QIFAAAAAAS GPGSPFFITN 60 SEQPCSPLWV FPDDSHDAGF VSNGGFRLSH CSKFPVPSCN PDSVTESGLA KDDKKNQISP 120 FMGFMPKDSP DGSCIIKERM AQALRHFKDL TEQHVLAQVW APVKNGNQYV LTTSGQPFVL 180 DPNSNGLHQY RLVSLMYMFS VDGDTDGVRG LPGRVFQKKL PEWTPNVQYY SSKEFPRLNH 240 ALNYNVKGTL ALPVFEPSGQ ACVGVLELIM TSQQINYAPE VDKVCKALEA VNLKSSEVLD 300 HPSPQICNEG RQNALAEILE ILSVVCETHM LPLAQTWVPC RHRSVLANGG GFKKTCSSFD 360 GSCMGQVCMS TTDVAFYVVD AHLWSFRGAC AEHHLQKGQG VAGRAFASHN TCFCEDITKF 420 CKTEYPLVHY ARMFGLRSSF AICLRSTHTG DDDYILEFFL PPNVQGYRDQ QAFLDSLLVT 480 MKQHFPSLRV ASGKDLDDSW RSIEVINPST DEKLSPWPDF TETSPPVSAS IPNGEMVHHD 540 CSKGSFVTNV KENTGGDSKV QIASSTAEGK EKGKKPEKKR GKAEKTISLE VLQQYFAGSL 600 KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKCVIESVQG GEGTFSLTSI 660 AATSIPVAVG SVTWAANLNG PDQHTPPDSK TSEFREQIGG LAIFKATEAN DQAGVSNLAD 720 RVARIEKHSH LETSILAVDI SNRSRSGCGS REESTGTPAS QGSCQGSPCL RDDTSPQNAS 780 PIDERTLKAT GQSLELVCRQ PREIILSSAF SMPDLVMIPQ EPFGGMLVED AGSSHDLRNL 840 CQGHEPPFDE HVTECSWTKP PLPDAIPKEV MVAAPVNEME HFLARPEVKT ITIKATYKED 900 IIRFRLSIDS GIEKLKEEVA KRLKLELGTF DIKYLDDDHE WVLIACDADL QECIDVSRSS 960 GGNIIRLLVH DMMANLGSSC ESSGG

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MKISEEPKQE SNPVPVQPPC AGSDGLMDLD FDLDGAWPLD QIFAAAAAAS GPGSPFFITN  60
SEQPCSPLWV FPDDSHDAGF VSNGGFRLSH CSKFPVPSCN PDSVTESGLA KDDKKNQISP  120
FMGFMPKDSP DGSCIIKERM AQALRHFKDL TEQHVLAQVW APVKNGNQYV LTTSGQPFVL  180
DPNSNGLHQY RLVSLMYMFS VDGDTDGVRG LPGRVFQKKL PEWTPNVQYY SSKEFPRLNH  240
ALNYNVKGTL ALPVFEPSGQ ACVGVLELIM TSQQINYAPE VDKVCKALEA VNLKSSEVLD  300
HPSPQICNEG RQNALAEILE ILSVVCETHM LPLAQTWVPC RHRSVLANGG GFKKTCSSFD  360
GSCMGQVCMS TTDVAFYVVD AHLWSFRGAC AEHHLQKGQG VAGRAFASHN TCFCEDITKF  420
CKTEYPLVHY ARMFGLRSSF AICLRSTHTG DDDYILEFFL PPNVQGYRDQ QAFLDSLLVT  480
MKQHFPSLRV ASGKDLDDSW RSIEVINPST DEKLSPWPDF TETSPPVSAS IPNGEMVHHD  540
CSKGSFVTNV KENTGGDSKV QIASSTAEGK EKGKKPEKKR GKAEKTISLE VLQQYFAGSL  600
KDAAKSLGVC PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKCVIESVQG GEGTFSLTSI  660
AATSIPVAVG SVTWAANLNG PDQHTPPDSK TSEFREQIGG LAIFKATEAN DQAGVSNLAD  720
RVARIEKHSH LETSILAVDI SNRSRSGCGS REESTGTPAS QGSCQGSPCL RDDTSPQNAS  780
PIDERTLKAT GQSLELVCRQ PREIILSSAF SMPDLVMIPQ EPFGGMLVED AGSSHDLRNL  840
CQGHEPPFDE HVTECSWTKP PLPDAIPKEV MVAAPVNEME HFLARPEVKT ITIKATYKED  900
IIRFRLSIDS GIEKLKEEVA KRLKLELGTF DIKYLDDDHE WVLIACDADL QECIDVSRSS  960
GGNIIRLLVH DMMANLGSSC ESSGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40732.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070353.1	0.0	protein NLP6 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2Z7C1P5	0.0	A0A2Z7C1P5_9LAMI; Uncharacterized protein
STRING	Migut.E00644.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]