PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24860.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 510aa    MW: 57461.2 Da    PI: 5.0037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24860.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-09174197427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 e C +++++  Ck+G++CkF+H+p
  KZV24860.1 174 EDCAYYMKYWSCKFGSNCKFNHPP 197
                 89********************97 PP
2zf-CCCH21.93e-07224244525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C++++  G CkyG  Ck+ H
  KZV24860.1 224 ECKYYLSEGGCKYGKDCKYVH 244
                 8******************** PP
3zf-CCCH39.59.6e-13268292327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C++++rtG CkyG++C+F+H++
  KZV24860.1 268 EKECPYYLRTGSCKYGSNCRFHHPE 292
                 689********************96 PP
4zf-CCCH283.7e-09402428127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f++tG Cky ++Ck++H++
  KZV24860.1 402 PGQPECSYFLKTGDCKYKSSCKYHHPK 428
                 5789*********************96 PP
5zf-CCCH33.57.1e-11451475226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++r+G+CkyG+ C++ H+
  KZV24860.1 451 DQPVCTHYHRYGICKYGPACRYDHP 475
                 6899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-5168198IPR000571Zinc finger, CCCH-type
SMARTSM003560.025170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535170198IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-7174197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011219246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31219247IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5224244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5224248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5225245IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.248265293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7266293IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6271291IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23401429IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6403428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5405429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309449477IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-5449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6451477IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8451475IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MADSSSTSEK PPIQKLGLGL LIPDNEPSDP VASNVMDVEV KRSESPTIAP DVDDDPPAEG  60
EVEVMDDDDS EQEAQLLDAI ERQVRQLTID QAEIEAGHKI LQSVGGWDDN DWKTEEREYV  120
DEEKGEQDEN EDEEGDEENA DVYAPGVSPS KGARYNNLSF GRRNVTYPIR PDAEDCAYYM  180
KYWSCKFGSN CKFNHPPPPR RRNQGIKERG TTREENSERE GQIECKYYLS EGGCKYGKDC  240
KYVHRANRTS MSHTPELNFL GLPIRLGEKE CPYYLRTGSC KYGSNCRFHH PEPTSVTVGD  300
SPSGFNNGGS LPSQHISTSS VSSWSSPRTY NDVSPFLPYP PTHQGAPPPN SEWNGYQAAA  360
YPTSERTLPT PPAFVINNLP TEMNFPMQRQ HDFIVDEYPE RPGQPECSYF LKTGDCKYKS  420
SCKYHHPKSR TSKARANPYV LNDKGLPLRP DQPVCTHYHR YGICKYGPAC RYDHPLNPGT  480
FPPPFDQKPF GDFRNVDGPG KFRQGNESRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072924.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-109C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2Z7AVE20.0A0A2Z7AVE2_9LAMI; Zinc finger CCCH domain-containing protein 67
STRINGMigut.I00264.1.p1e-174(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-110C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]