PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV15632.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TCP

Protein Properties

Length: 405aa MW: 45401.6 Da PI: 9.2267

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV15632.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	140	1.9e-43	120	278	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa...seceaesssssa 82 agkkdrhski+T++g RdRR+Rls+++a++fFdLqd LG+dk+sktieWL++++k+aikel+++ s + sece s +++ KZV15632.1 120 AGKKDRHSKICTAQGVRDRRMRLSLQVARKFFDLQDLLGYDKASKTIEWLFNKSKKAIKELARDhlnegknnisvsdakS---EsliSECEVLSGIEEN 215 89**************************************************************99998887664431...2444555333333333 PP TCP 83 snsssg............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 sn +++ + ++s+ ++ + +ks++++ + ++esr +ararar rt ekm+++ KZV15632.1 216 SNTEIKerkvtatsrnnaDISPSSVNKGSGRKSQKTTKSSQRESRDEARARARCRTIEKMMMR 278 333333555566666666555555566666666666789999*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-43	121	277	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.362	122	180	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.288	257	274	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MFPSSNSTDN PMESLFRKAI FCDQNPISKQ YDPPIFSNFP SPFFEEHEFP LNQMLSHSPQ 60 MGGSSFLVSD NIPDPAGKDT ARFNVVDASR TKEKSRDTNP SPVSTPVRRR SLGVVPRNRA 120 GKKDRHSKIC TAQGVRDRRM RLSLQVARKF FDLQDLLGYD KASKTIEWLF NKSKKAIKEL 180 ARDHLNEGKN NISVSDAKSE SLISECEVLS GIEENSNTEI KERKVTATSR NNADISPSSV 240 NKGSGRKSQK TTKSSQRESR DEARARARCR TIEKMMMRRL GNLSQWNKSN PNYEDIQKVG 300 SSNIPFEEPN SDFQERVSSY HGDYHNLPDL GTIENLFGSS STTSNSCPNP DLQCPATASA 360 CFQSRISSIL GFLGNWDVLN NEKNQVPLVG NPNSVFVDSP NFLFQ

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MFPSSNSTDN PMESLFRKAI FCDQNPISKQ YDPPIFSNFP SPFFEEHEFP LNQMLSHSPQ  60
MGGSSFLVSD NIPDPAGKDT ARFNVVDASR TKEKSRDTNP SPVSTPVRRR SLGVVPRNRA  120
GKKDRHSKIC TAQGVRDRRM RLSLQVARKF FDLQDLLGYD KASKTIEWLF NKSKKAIKEL  180
ARDHLNEGKN NISVSDAKSE SLISECEVLS GIEENSNTEI KERKVTATSR NNADISPSSV  240
NKGSGRKSQK TTKSSQRESR DEARARARCR TIEKMMMRRL GNLSQWNKSN PNYEDIQKVG  300
SSNIPFEEPN SDFQERVSSY HGDYHNLPDL GTIENLFGSS STTSNSCPNP DLQCPATASA  360
CFQSRISSIL GFLGNWDVLN NEKNQVPLVG NPNSVFVDSP NFLFQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV15632.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552305.1	1e-102	transcription factor TCP12-like
TrEMBL	A0A2Z7A9P1	0.0	A0A2Z7A9P1_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-29	TCP domain protein 12