PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029885
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 281aa    MW: 31455.2 Da    PI: 8.8311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029885genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-1996145356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r+r++lg++ tae Aa a+++a+ kl+ge
  DCAR_029885  96 YRGVRQRH-WGKWVAEIRLPHN---RTRVWLGTYETAESAAYAYDRAAYKLRGE 145
                  9******9.**********732...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3195153IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2295152IPR016177DNA-binding domain
PROSITE profilePS5103223.05195152IPR001471AP2/ERF domain
SMARTSM003804.0E-3595158IPR001471AP2/ERF domain
PRINTSPR003671.5E-1096107IPR001471AP2/ERF domain
CDDcd000187.56E-2296154No hitNo description
PfamPF008473.7E-1396145IPR001471AP2/ERF domain
PRINTSPR003671.5E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDMSFVHNEG IHIRTSLSNI ILRSTNTLDS IFSHCSSSVP CYNPVAEPLG SSMYSQQKFS  60
EENLSRNVHL QTQIPNHFQK PEYRNSNTRL SKKNMYRGVR QRHWGKWVAE IRLPHNRTRV  120
WLGTYETAES AAYAYDRAAY KLRGEHTRLN FPNLSKLGTG DDSRLNALRN TVDAKIQAIL  180
QKLKQEKSNK ISRKCAGIES QKVMIVESSS STSLTNDDNS LSNEMVSSSV SEDGSSKGLN  240
SPYSVTGDCL GLAGDVEFKG FTLAHMPSYD PELIWEVLAN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2196152360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225836.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W23e-47ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A175YGC50.0A0A175YGC5_DAUCS; Uncharacterized protein
STRINGXP_009604256.15e-76(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]