PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029869

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 971aa MW: 106017 Da PI: 5.2349

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029869	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.3e-29	573	624	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ DCAR_029869 573 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 624 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	563	644	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	577	624	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.03E-22	875	960	No hit	No description
PROSITE profile	PS51745	25.183	876	958	IPR000270	PB1 domain
SMART	SM00666	1.3E-24	876	958	IPR000270	PB1 domain
Pfam	PF00564	6.4E-19	876	957	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.9E-25	876	957	No hit	No description
CDD	cd06407	8.05E-36	877	957	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MSEPQAVEDE DKSKNSTRKP GNSASYPVGL IDRESLMMMD VDLDLDASWI FDQISTDPAS 60 PFLLSDQPFS PLWPFSDDAS ALSAPLTGVS LPLLPSCDPQ LTYDNKQCSS NDKKSLPSPL 120 LGLVPLDYSD GSCLIKERMT QALRYFKEST EQHVLAQIWA PVKKGDRYVL TTSGQPFVLG 180 LNSSGLHQYR MASVMYMFSV DGESNLLGLP GRVFQQKLPE WTPNVQYYSS KEYPRLDYAL 240 HYNVQGTLAL PVFEPSGGAC LGVLELIMTS QKINYAPEVD KVCKALEICN KGRQNALAEI 300 LEVLTLVCET HKLPLAQTWV PCRHRSVLAY GGGLKKSCSS FDGSCMGQVC MSTTDVAYYV 360 VDYHMWGFRE ACAEHHLLKG QGVAGRSFSS QSSCFCEDIT KFSKTEYPLV HYARMFGLSS 420 SFAICLQSSH TGNDNYILEF FMPPNTLEGN KHYTMLDTML ATMKKQFRSL KVASGKELDE 480 EGRSVEVIEA SSDGDPDSRI ISVQKLESNV IPCTVTRDGE NGHVDLSGKP IIQKSDAVTN 540 IANVAGSGEI SNGAPLSENK DAKKKSERKR GKAEKSISLE VLQQYFAGSL KDAAKSLGVC 600 PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGTFTLTSL AKSSLPAGVG 660 SVSWPVSLNG SSPQNSPVSI PSEVRAEINN DGQAENIDLP SGGRLQCEDE YIHLQGGYIP 720 ELGEGSNRSK TGSGSREHST GTPTSHASAQ GSPFNVNNSS QNDQVVSLLG EDCLKVGASF 780 EMARQPIKEA NLPVAFPVPN VVVGAETEEL FGGMLIEDAG SSHDLTNLCQ TGGTFPDERI 840 PESSWANQPP SDEFLKGSVP HLEEKPQIPS RTEVKTVTVK ATYKEDIIRF RLPLSSGIIK 900 LEEEVSKRVK LEVGTFDLKY LDDDQEWVLI ACDADLQECV EISRSSGRNI IRLLVQDIMA 960 NLGSSCESSG *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MSEPQAVEDE DKSKNSTRKP GNSASYPVGL IDRESLMMMD VDLDLDASWI FDQISTDPAS  60
PFLLSDQPFS PLWPFSDDAS ALSAPLTGVS LPLLPSCDPQ LTYDNKQCSS NDKKSLPSPL  120
LGLVPLDYSD GSCLIKERMT QALRYFKEST EQHVLAQIWA PVKKGDRYVL TTSGQPFVLG  180
LNSSGLHQYR MASVMYMFSV DGESNLLGLP GRVFQQKLPE WTPNVQYYSS KEYPRLDYAL  240
HYNVQGTLAL PVFEPSGGAC LGVLELIMTS QKINYAPEVD KVCKALEICN KGRQNALAEI  300
LEVLTLVCET HKLPLAQTWV PCRHRSVLAY GGGLKKSCSS FDGSCMGQVC MSTTDVAYYV  360
VDYHMWGFRE ACAEHHLLKG QGVAGRSFSS QSSCFCEDIT KFSKTEYPLV HYARMFGLSS  420
SFAICLQSSH TGNDNYILEF FMPPNTLEGN KHYTMLDTML ATMKKQFRSL KVASGKELDE  480
EGRSVEVIEA SSDGDPDSRI ISVQKLESNV IPCTVTRDGE NGHVDLSGKP IIQKSDAVTN  540
IANVAGSGEI SNGAPLSENK DAKKKSERKR GKAEKSISLE VLQQYFAGSL KDAAKSLGVC  600
PTTMKRICRQ HGISRWPSRK INKVNRSLSK LKRVIESVQG AEGTFTLTSL AKSSLPAGVG  660
SVSWPVSLNG SSPQNSPVSI PSEVRAEINN DGQAENIDLP SGGRLQCEDE YIHLQGGYIP  720
ELGEGSNRSK TGSGSREHST GTPTSHASAQ GSPFNVNNSS QNDQVVSLLG EDCLKVGASF  780
EMARQPIKEA NLPVAFPVPN VVVGAETEEL FGGMLIEDAG SSHDLTNLCQ TGGTFPDERI  840
PESSWANQPP SDEFLKGSVP HLEEKPQIPS RTEVKTVTVK ATYKEDIIRF RLPLSSGIIK  900
LEEEVSKRVK LEVGTFDLKY LDDDQEWVLI ACDADLQECV EISRSSGRNI IRLLVQDIMA  960
NLGSSCESSG *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226568.1	0.0	PREDICTED: protein NLP6 isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A175YFV2	0.0	A0A175YFV2_DAUCS; Uncharacterized protein
STRING	EOY25090	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	DCAR_029869

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]