PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029722
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 645aa    MW: 73656.2 Da    PI: 8.6774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029722genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09587633347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                       W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ ++
      DCAR_029722 587 VWSAVQERALVQALKTFPKEttqRWERVATAVP-GKTVNQCKKKFASL 633
                      6********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.02E-2094176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.7E-2196194IPR001623DnaJ domain
SMARTSM002712.8E-1397172IPR001623DnaJ domain
PROSITE profilePS5007618.51698180IPR001623DnaJ domain
CDDcd062571.06E-1198169IPR001623DnaJ domain
PfamPF002264.3E-1898177IPR001623DnaJ domain
PRINTSPR006257.3E-9103121IPR001623DnaJ domain
PRINTSPR006257.3E-9121136IPR001623DnaJ domain
PRINTSPR006257.3E-9152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS512049.749301374IPR014012Helicase/SANT-associated domain
PROSITE profilePS500906.133455510IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.4E-4456500IPR009057Homeodomain-like
SuperFamilySSF466891.05E-6457503IPR009057Homeodomain-like
SMARTSM007174.2E-5459512IPR001005SANT/Myb domain
PfamPF002492.0E-5461502IPR001005SANT/Myb domain
CDDcd001673.75E-4462502No hitNo description
PROSITE profilePS512939.457583638IPR017884SANT domain
SMARTSM007179.7E-9584636IPR001005SANT/Myb domain
SuperFamilySSF466894.41E-9586640IPR009057Homeodomain-like
PfamPF002491.6E-7587633IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-5587633IPR009057Homeodomain-like
CDDcd001673.38E-6588634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAPKSSIRLI SYSEELIDGR PLYVSSNCLP VKALYYEPAG HSYHLAAQKL LGFFEKKDVE  60
GDNQDVPNDK VNESIHSSGS YSSSKGKKKS GSGGDQQDHY ALLGLSHLRY LATEDQIKKS  120
YRETALKYHP DKQAALILSE VTEAAKQAKK DEIENHFKSI QEAYEALIDP VKRRIYDSTD  180
EFDDEIPTDC APQDFFKVYG PAFMRNGRWS VNQPVPPLGD DSSSLKEVDD FYNFWYAFKS  240
WREFPHADEF DLEQAESRDH KRWMERQNAK LSEKARKEEY ARVRILVDNA YKRDPRIVRR  300
KEQEKAEKQR RKEAKYLAKK MQEEEAARIV EEEKRKKEEE QKRAAEVALQ QKKLKEKEKK  360
LLRKEKARLR TLSGSVLSQH LLDLCEDDVE KLCTSLDIEQ LKILCNNIEG EEGLGRAELI  420
REALACNNGE KQDGMKQPMQ NGHATKVASK IPLGNYEKKE KPWSKEEIEL LRKGMQKFPK  480
GTSRRWEVVS DYIGTERSVE EILKATKTVL LQKPDSSKAF DSFLEKRKPA VSIASPLTTR  540
EEVVGESLTN GVKETAVKTE DLKESSSKPE SPQKSDDVDA ASSDQDVWSA VQERALVQAL  600
KTFPKETTQR WERVATAVPG KTVNQCKKKF ASLKESFRSK KSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919429720123Zuotin
5dje_B1e-1919429720123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226702.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A175YF850.0A0A175YF85_DAUCS; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain