PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026713
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 371aa    MW: 40942.4 Da    PI: 9.051
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026713genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.41.2e-38932342133
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec...eaesssssasnsssg 88 
                   gkkdrh ki T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+ai +l ++        s   +  +   +++s+         +
  DCAR_026713  93 SGKKDRHTKIKTARGVRDRRMRLSLQIARKFFDLQDRLGFDKASKTIEWLFSKSKKAINQLSSNgshltrmsS---S-TTstgQKGSK---------S 177
                  68**************************************************************655543221...1.1112222222.........1 PP

          TCP  89 ...........kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                             +a+ + + + + +++ ++sa + ak+ r karararert ek++++
  DCAR_026713 178 leisegltkgkNASGQGEcEVSGTKETKKSAKHNAKDLRDKARARARERTWEKKMNR 234
                  22334455554222222224444444444457778899**********999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3994233IPR005333Transcription factor, TCP
PROSITE profilePS5136934.51295153IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.344213230IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSWISNSIHG DKFYNGSPFV IPQEEEALPF FQNFVSPLYD DTQLFSVPLA ADEISNVPLP  60
TVGTEIHQHS STSKNESSEV KRGGLNKGSV RRSGKKDRHT KIKTARGVRD RRMRLSLQIA  120
RKFFDLQDRL GFDKASKTIE WLFSKSKKAI NQLSSNGSHL TRMSSSTTST GQKGSKSLEI  180
SEGLTKGKNA SGQGECEVSG TKETKKSAKH NAKDLRDKAR ARARERTWEK KMNRCLEKSN  240
WSLSDQVYSL AQLGPAGNPN PLFDLGQESM SNTSSQDNLS TSQSSIHHHL ANMELLGTTT  300
SPSGSVSCSM YGYDHEKNGD LFSGGLDSYS NNLSYLGWDI SAECLNPNST DHFLESSGKI  360
FGYFDQNQVD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-14100153154Putative transcription factor PCF6
5zkt_B4e-14100153154Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222278.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A175YQF90.0A0A175YQF9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.17e-27TCP domain protein 12