PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021235
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 403aa    MW: 44967.8 Da    PI: 5.1141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021235genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19181231256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  DCAR_021235 181 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 231
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.47E-35180239No hitNo description
Gene3DG3DSA:3.30.730.104.8E-32181239IPR001471AP2/ERF domain
PROSITE profilePS5103223.169181238IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-23181239IPR016177DNA-binding domain
SMARTSM003804.1E-40181244IPR001471AP2/ERF domain
PRINTSPR003673.6E-11182193IPR001471AP2/ERF domain
PfamPF008473.3E-13182231IPR001471AP2/ERF domain
PRINTSPR003673.6E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVVEESHFIS SMDGDKDQFK DFDYTGLEMR QWKTIFEEAS MSDRPFKKIN QDFSHFSSPA  60
TTATSTSPVS IPLSSSTQFP FAFNGSPQAI ESLHSPPMNN QQTQQQMISF EPRHHQGFGF  120
PPYFCGDLAA SPKYQQQELL QYWSNALNLS PRGRMMMMNK LGQDSRALFR PPIQPIAQTK  180
LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAAMA YDREAFKLRG ENARLNFPER  240
FLNKDKTVGV EPSSSTLSPE ASKQAQEFPE ILNQASDTEL LPLAKSGDNL NNDSGLGSSA  300
GEYLQPSVGS SGAGGGVLGS SSELVWGDIS DTWFNPFPGG WGPGSPAWDT LDHSNNFMMP  360
TNLSLGNAHQ EEHTNLNTQK QPESMGSASS DTMNTFFWND QY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21177240165ATERF1
3gcc_A6e-21177240165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255531.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A161ZWJ50.0A0A161ZWJ5_DAUCS; Uncharacterized protein
STRINGEOX993821e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-53ERF family protein