PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012996
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 398aa    MW: 44606.6 Da    PI: 5.888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012996genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19192242256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  DCAR_012996 192 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 242
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.68E-34191251No hitNo description
SuperFamilySSF541716.15E-23192250IPR016177DNA-binding domain
PROSITE profilePS5103222.998192249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32192251IPR001471AP2/ERF domain
SMARTSM003801.5E-39192255IPR001471AP2/ERF domain
PRINTSPR003676.4E-11193204IPR001471AP2/ERF domain
PfamPF008472.2E-12193242IPR001471AP2/ERF domain
PRINTSPR003676.4E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSGNAKKVTG ESQMDHGSNQ DFDYTSLEGR QWKTVFEEAS MSTITTDRPF KRQHSFQSSS  60
SSASSFPTTS TPQSSRLFPF AFDDNGSQQS MESLQKYRTS PLPILPAQNH HQQHHHQQQQ  120
QMISFAPNHQ GFPPYFSGDL AQYQQQQLFQ YWTNELNLSP RGRMMMINRL GQNTNRNSMF  180
RPPTQPVTQT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAM AYDREAFKLR  240
GENARLNFPE HYLNKNKPKS PDSSSQAPEP PQQLPEPPSS SELAPSIELG DNSLTDDSGF  300
GSSEVTTGGE ANVVSSSVSS ELVWGGVGED WFNAVAEGWG PGSAVWDDLD TSNNLLLPSN  360
YSFGNPQNQE PHSSDPQDHN IFSAFSSHSS SYPTDPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21191249160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244630.10.0PREDICTED: ethylene-responsive transcription factor ERF054
SwissprotQ9SKT12e-60ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A162ADN10.0A0A162ADN1_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000472651e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]